G1289700


Basic Information

Item Value
gene id G1289700
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38584514 ~ 38585455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1471896
tagcactgagatgcagtgccttagaccgctgcgccacttgggagcccaaggTAGGCCTTCTTTTCGGAAGGccttccattagatgttggaacattgctgcagggactagCTTTCATACAGCCATATGCATTAGTGAGGACGGGCACTGATCTTGGGcataaggcctggctcgcagtcagcgttccaattcatctcaaaggtgtttgatggggttgaggtctgggctctgtgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggacctcgctttgtgcgcGAGGGaattgtaatgctgaaacaggaaaggaccttccccaaactgttgccataaagttggaagcacagaatcgtctagaatttcATTCTGtctatgctgtagtgttaagatttcccttcactggaactaaggggcctagcccgaaccatgaaaaacatcctccagaccattattcctcctgcacaaaactgtacagttggcactatgcattggggcaggtaacattctcctggcatccgccaaacctagaTTTGTTCGTcatactgccagatggtgaagcgttgTTGCTTCtcgacgtttccacttcacaatagcagcacttacagttgaccggggcagctctagcatggcagaaatttgacaaactgacttgttggaaaggtggtatcctatgacggtgtcacaTTGAAAGTCcctaagctcttcagtaaagccattctactgccaatgtttttcaATGGAGATTGAttgactgtgtgctcgattttatacacctgtcaccaGGTGTGACAAATAGCCGattcca
>TU1471898
tagcactgagatgcagtgccttagaccgctgcgccacttgggagcccaaggTAGGCCTTCTTTTCGGAAGGccttccattagatgttggaacattgctgcagggactagCTTTCATACAGCCATATGCATTAGTGAGGACGGGCACTGATCTTGGGcataaggcctggctcgcagtcagcgttccaattcatctcaaaggtgtttgatggggttgaggtctgggctctgtgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggacctcgctttgtgcgcGAGGGaattgtaatgctgaaacaggaaaggaccttccccaaactgttgccataaagttggaagcacagaatcgtctagaatttcATTCTGtctatgctgtagtgttaagatttcccttcactggaactaaggggcctagcccgaaccatgaaaaacatcctccagaccattattcctcctgcacaaaactgtacagttggcactatgcattggggcaggtaacattctcctggcatccgccaaacctagaTTTGTTCGTcatactgccagatggtgaagcgttgTTGCTTCtcgacgtttccacttcacaatagcagcacttacagttgaccggggcagctctagcatggcagaaatttgacaaactgacttgttggaaaggtggtatcctatgacggtgtcacaTTGAAAGTCcctaagctcttcagtaaagccattctactgccaatgtttttcaATGGAGATTGAttgactgtgtgctcgattttatacacctgtcaccaGGTGTGACAAATAGCCGattccactcatttgaaggggtgtcctcatacttttgtgtatacagtgtatatctctctattatgtatgggaatactttgctacagatttccaaaattaaaatcacttggagttgatttgttggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1471896 False 824 lncRNA 0.48 1 38584514 38585337
TU1471898 True 942 lncRNA 0.46 1 38584514 38585455

Neighbor

gene id symbol gene type direction distance location
LOC110490039 LOC106590018 coding upstream 3758 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 16035 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 546489 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 566526 37974722 ~ 38017988 (+)
nrp1a LOC106590027 coding upstream 623921 37847266 ~ 37960593 (+)
LOC110490723 LOC106612786 coding downstream 269795 38855250 ~ 38856108 (+)
LOC110490726 LOC106600248 coding downstream 497359 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 502618 39086859 ~ 39089636 (+)
brca2 NA coding downstream 961889 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 1063915 39649370 ~ 39684044 (+)
G1289696 NA non-coding upstream 13890 38570346 ~ 38570624 (+)
G1289678 NA non-coding upstream 107134 38477165 ~ 38477380 (+)
G1289676 NA non-coding upstream 108273 38475858 ~ 38476241 (+)
G1289500 NA non-coding upstream 388414 38195782 ~ 38196100 (+)
G1289707 NA non-coding downstream 7037 38592492 ~ 38592692 (+)
G1289708 NA non-coding downstream 7908 38593363 ~ 38593574 (+)
G1289740 NA non-coding downstream 44971 38630426 ~ 38630655 (+)
G1289855 NA non-coding downstream 219177 38804632 ~ 38809711 (+)
G1289875 NA non-coding downstream 255316 38840771 ~ 38840986 (+)
G1289491 NA other upstream 400511 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2074002 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2491118 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4472243 34111807 ~ 34112271 (+)
G1282302 NA other upstream 5886478 32687558 ~ 32698036 (+)
G1289710 NA other downstream 9425 38594880 ~ 38600241 (+)
G1290549 LOC106590036 other downstream 451550 39037005 ~ 39061248 (+)
G1290614 NA other downstream 540817 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1482103 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1534814 40089464 ~ 40132600 (+)

Expression


Co-expression Network