G1289875


Basic Information

Item Value
gene id G1289875
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38840771 ~ 38840986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472081
gccatcttcACCGCGAGAAGCTTACAATTCCCCACATTGTAGCTCTCCGTGGTAAGGTGCAGGGATGTACCTTGAGGTCCACGGCAGACGGCTGGGACAGGACTGCCCCGACGCCGACATCCGAAGCATCTGCCTTCACCACTAACTGGCAGAACTGGCAGAATGAACCATGATGAGAGCTGTGGTGAAGTGGTGTTCGAGATTCCAAAACGTCCG

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472081 True 216 lncRNA 0.56 1 38840771 38840986

Neighbor

gene id symbol gene type direction distance location
LOC110490039 LOC106590018 coding upstream 260015 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 272292 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 802746 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 822783 37974722 ~ 38017988 (+)
nrp1a LOC106590027 coding upstream 880178 37847266 ~ 37960593 (+)
LOC110490723 LOC106612786 coding downstream 14264 38855250 ~ 38856108 (+)
LOC110490726 LOC106600248 coding downstream 241828 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 247087 39086859 ~ 39089636 (+)
brca2 NA coding downstream 706358 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 808384 39649370 ~ 39684044 (+)
G1289855 NA non-coding upstream 31060 38804632 ~ 38809711 (+)
G1289740 NA non-coding upstream 210116 38630426 ~ 38630655 (+)
G1289708 NA non-coding upstream 247197 38593363 ~ 38593574 (+)
G1289707 NA non-coding upstream 248079 38592492 ~ 38592692 (+)
G1289700 NA non-coding upstream 255316 38584514 ~ 38585455 (+)
G1289910 NA non-coding downstream 43698 38884684 ~ 38884898 (+)
G1289912 NA non-coding downstream 45741 38886727 ~ 38886952 (+)
G1289920 NA non-coding downstream 57765 38898751 ~ 38899051 (+)
G1289928 NA non-coding downstream 75081 38916067 ~ 38916455 (+)
G1289929 NA non-coding downstream 76257 38917243 ~ 38917553 (+)
G1289710 NA other upstream 240530 38594880 ~ 38600241 (+)
G1289491 NA other upstream 656768 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2330259 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2747375 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4728500 34111807 ~ 34112271 (+)
G1290549 LOC106590036 other downstream 196019 39037005 ~ 39061248 (+)
G1290614 NA other downstream 285286 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1226572 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1279283 40089464 ~ 40132600 (+)
G1293072 NA other downstream 2742387 41583216 ~ 41589030 (+)

Expression


Co-expression Network