Gene
RNA
| Item | Value |
|---|---|
| gene id | G1290488 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 38933767 ~ 38934215 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1472722 | True | 449 | lncRNA | 0.38 | 1 | 38933767 | 38934215 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490723 | LOC106612786 | coding | upstream | 77659 | 38855250 ~ 38856108 (+) |
| LOC110490039 | LOC106590018 | coding | upstream | 353011 | 38576635 ~ 38580756 (+) |
| LOC110490038 | LOC106590019 | coding | upstream | 365288 | 38494289 ~ 38568479 (+) |
| LOC110490034 | rab18 | coding | upstream | 895742 | 38018211 ~ 38038025 (+) |
| LOC110490033 | LOC106590025 | coding | upstream | 915779 | 37974722 ~ 38017988 (+) |
| LOC110490726 | LOC106600248 | coding | downstream | 148599 | 39082814 ~ 39084700 (+) |
| LOC110490841 | NA | coding | downstream | 153858 | 39086859 ~ 39089636 (+) |
| brca2 | NA | coding | downstream | 613129 | 39547344 ~ 39589108 (+) |
| LOC110490049 | LOC106612364 | coding | downstream | 715155 | 39649370 ~ 39684044 (+) |
| LOC110490050 | LOC106612350 | coding | downstream | 978227 | 39845713 ~ 39929225 (+) |
| G1290487 | NA | non-coding | upstream | 321 | 38933241 ~ 38933446 (+) |
| G1290478 | NA | non-coding | upstream | 7854 | 38925711 ~ 38925913 (+) |
| G1289929 | NA | non-coding | upstream | 16214 | 38917243 ~ 38917553 (+) |
| G1289928 | NA | non-coding | upstream | 17312 | 38916067 ~ 38916455 (+) |
| G1289920 | NA | non-coding | upstream | 34716 | 38898751 ~ 38899051 (+) |
| G1290491 | NA | non-coding | downstream | 1870 | 38936085 ~ 38936288 (+) |
| G1290509 | NA | non-coding | downstream | 12897 | 38947112 ~ 38947345 (+) |
| G1290518 | NA | non-coding | downstream | 23730 | 38957945 ~ 38958196 (+) |
| G1290520 | NA | non-coding | downstream | 26553 | 38960768 ~ 38961267 (+) |
| G1290521 | NA | non-coding | downstream | 29469 | 38963684 ~ 38963925 (+) |
| G1289710 | NA | other | upstream | 333526 | 38594880 ~ 38600241 (+) |
| G1289491 | NA | other | upstream | 749764 | 38183436 ~ 38184003 (+) |
| G1287489 | LOC106590045 | other | upstream | 2423255 | 36509078 ~ 36510512 (+) |
| G1286648 | LOC106590042 | other | upstream | 2840371 | 36035583 ~ 36093396 (+) |
| G1284354 | NA | other | upstream | 4821496 | 34111807 ~ 34112271 (+) |
| G1290549 | LOC106590036 | other | downstream | 102790 | 39037005 ~ 39061248 (+) |
| G1290614 | NA | other | downstream | 192057 | 39126272 ~ 39127009 (+) |
| G1291464 | NA | other | downstream | 1133343 | 40067558 ~ 40067907 (+) |
| LOC110490048 | il-1racp | other | downstream | 1186054 | 40089464 ~ 40132600 (+) |
| G1293072 | NA | other | downstream | 2649158 | 41583216 ~ 41589030 (+) |
