G1290520


Basic Information

Item Value
gene id G1290520
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38960768 ~ 38961267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472754
tgaCGAATTAAACGGCTTTACATTTTCATCAAATTAACATCTCTCCATTACTCATCAGGAAATTTGAACAAAGTAACATGAACATTGTTACTGGAGGTTGTCAAACCATTACCCTAtagcaaaaaaacatcccaaGTGGGTCATTTTCCACTGCTCACCTCGAGACTCAATCTCTTGTATGCACATGTCCACCACCATGGGTCGCTTGGAATTGTGGGCTTTTACCAGTGTCGTAAGGTCACAACTGTATACTTTTTTGACATGCTTGAGGTCAGGCTTGCAGTCATTTGGCACCATTTTGGAACACTGCTTGTGGACATTCAAACCGCAAtctggggagaaaaaaaagatgGGATTAGCAAAAATGCTGCAtcatttaatttaacctttatttaagtctcATTATCACAATTAAAAATGGCAGGTAGTAGTGGAGCAGCACTAAAGTATTATTCTGTTACAATGTATAAAGAATGTCCTCAATGTTATTTCCAATTGGA

Function

NR:

description
PREDICTED: N-chimaerin isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472754 True 500 lncRNA 0.38 1 38960768 38961267

Neighbor

gene id symbol gene type direction distance location
LOC110490723 LOC106612786 coding upstream 104660 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 380012 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 392289 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 922743 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 942780 37974722 ~ 38017988 (+)
LOC110490726 LOC106600248 coding downstream 121547 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 126806 39086859 ~ 39089636 (+)
brca2 NA coding downstream 586077 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 688103 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 951175 39845713 ~ 39929225 (+)
G1290518 NA non-coding upstream 2572 38957945 ~ 38958196 (+)
G1290509 NA non-coding upstream 13423 38947112 ~ 38947345 (+)
G1290491 NA non-coding upstream 24480 38936085 ~ 38936288 (+)
G1290488 NA non-coding upstream 26553 38933767 ~ 38934215 (+)
G1290487 NA non-coding upstream 27322 38933241 ~ 38933446 (+)
G1290521 NA non-coding downstream 2417 38963684 ~ 38963925 (+)
G1290522 NA non-coding downstream 3628 38964895 ~ 38965109 (+)
G1290523 NA non-coding downstream 3983 38965250 ~ 38965697 (+)
G1290526 NA non-coding downstream 5851 38967118 ~ 38967525 (+)
G1290529 NA non-coding downstream 9407 38970674 ~ 38970907 (+)
G1289710 NA other upstream 360527 38594880 ~ 38600241 (+)
G1289491 NA other upstream 776765 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2450256 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2867372 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4848497 34111807 ~ 34112271 (+)
G1290549 LOC106590036 other downstream 75738 39037005 ~ 39061248 (+)
G1290614 NA other downstream 165005 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1106291 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1159002 40089464 ~ 40132600 (+)
G1293072 NA other downstream 2622106 41583216 ~ 41589030 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G87862 NA non-coding CI01000015 null 1569975 ~ 1570847 (-)
tiger barb (Puntius tetrazona) G67641 NA non-coding NC_056707.1 CM032076.1 4162356 ~ 4165072 (+)