G1290559


Basic Information

Item Value
gene id G1290559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39024349 ~ 39030630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472807
tttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggtcagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacagccagatcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccgg
>TU1472808
tttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggtcagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacagccagatcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccgg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472807 False 402 lncRNA 0.44 2 39024349 39030630
TU1472808 True 402 lncRNA 0.44 2 39024349 39030630

Neighbor

gene id symbol gene type direction distance location
LOC110490723 LOC106612786 coding upstream 168241 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 443593 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 455870 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 986324 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 1006361 37974722 ~ 38017988 (+)
LOC110490726 LOC106600248 coding downstream 52184 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 57443 39086859 ~ 39089636 (+)
brca2 NA coding downstream 516714 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 618740 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 881812 39845713 ~ 39929225 (+)
G1290536 NA non-coding upstream 36807 38987279 ~ 38987542 (+)
G1290529 NA non-coding upstream 53442 38970674 ~ 38970907 (+)
G1290526 NA non-coding upstream 56824 38967118 ~ 38967525 (+)
G1290523 NA non-coding upstream 58652 38965250 ~ 38965697 (+)
G1290522 NA non-coding upstream 59240 38964895 ~ 38965109 (+)
G1290549 LOC106590036 non-coding downstream 6797 39037005 ~ 39061248 (+)
G1290613 NA non-coding downstream 92051 39122681 ~ 39123073 (+)
G1290619 NA non-coding downstream 106161 39136791 ~ 39166202 (+)
G1290623 NA non-coding downstream 150606 39181236 ~ 39184267 (+)
G1289710 NA other upstream 424108 38594880 ~ 38600241 (+)
G1289491 NA other upstream 840346 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2513837 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2930953 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4912078 34111807 ~ 34112271 (+)
G1290614 NA other downstream 95642 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1036928 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1089639 40089464 ~ 40132600 (+)
G1293072 NA other downstream 2552743 41583216 ~ 41589030 (+)

Expression


Co-expression Network