G1290550 (zc3hf)


Basic Information

Item Value
gene id G1290550
gene name zc3hf
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39027242 ~ 39033420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472791
GTGAGCATCAGGATATTTTATTGTGAATCTGTTTTAGACATCTCATATTCATAGTCCATGAGGCACTGTTCTACTAGAAGTCATCATTGTCAGTCATCCAGGTCCAGTGTGTTGAGTTCCTCATCCAGTTCGTCCAGGTCCTCGCCGGTGAAAAGGTTCTCGTCCACAGGCACGGGCTCTGCTTCCTTGTCGTCGAGAGTCTCGTCTTCCCCATCGTGCCCGTTCTCCTCCACACCTCCGCAAGCACCGTTCAGCTGGTCATCTGGGAGATGGTGCAAGGCACAGGTTCAGAACATCAC
>TU1472796
GTGAGCATCAGGATATTTTATTGTGAATCTGTTTTAGACATCTCATATTCATAGTCCATGAGGCACTGTTCTACTAGAAGTCATCATTGTCAGTCATCCAGGTCCAGTGTGTTGAGTTCCTCATCCAGTTCGTCCAGGTCCTCGCCGGTGAAAAGGTTCTCGTCCACAGGCACGGGCTCTGCTTCCTTGTCGTCGAGAGTCTCGTCTTCCCCATCGTGCCCGTTCTCCTCCACACCTCCGCAAGCACCGTTCAGCTGGTCATCATTCGTTTCCTTTGTTGGCTTTGATTTGGCTGTGAATCTGTCGATTGCAGCAACAGTTATTCCGGTGTTGTCAACTTCCTTTGGAATAAACCTGGCTAGATCAACATCCTGGAACTCGTGAACATATTCAACCTCAACGTCATCATTGTCCTCAACATATTTTATGTCATCAGCCTCCTCATCGTCATCATCAGCCAGATCCGGACAGAACTCAAATACTTGACGGCCGCTT

Function

NR:

description
zinc finger CCCH domain-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472791 False 299 lncRNA 0.51 2 39027242 39033420
TU1472796 True 495 lncRNA 0.47 3 39027242 39029409

Neighbor

gene id symbol gene type direction distance location
LOC110490723 LOC106612786 coding upstream 171134 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 446486 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 458763 38494289 ~ 38568479 (+)
LOC110490034 rab18 coding upstream 989217 38018211 ~ 38038025 (+)
LOC110490033 LOC106590025 coding upstream 1009254 37974722 ~ 38017988 (+)
LOC110490726 LOC106600248 coding downstream 49394 39082814 ~ 39084700 (+)
LOC110490841 NA coding downstream 54653 39086859 ~ 39089636 (+)
brca2 NA coding downstream 513924 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 615950 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 879022 39845713 ~ 39929225 (+)
G1290536 NA non-coding upstream 39700 38987279 ~ 38987542 (+)
G1290529 NA non-coding upstream 56335 38970674 ~ 38970907 (+)
G1290526 NA non-coding upstream 59717 38967118 ~ 38967525 (+)
G1290523 NA non-coding upstream 61545 38965250 ~ 38965697 (+)
G1290522 NA non-coding upstream 62133 38964895 ~ 38965109 (+)
G1290549 LOC106590036 non-coding downstream 4007 39037005 ~ 39061248 (+)
G1290613 NA non-coding downstream 89261 39122681 ~ 39123073 (+)
G1290619 NA non-coding downstream 103371 39136791 ~ 39166202 (+)
G1290623 NA non-coding downstream 147816 39181236 ~ 39184267 (+)
G1289710 NA other upstream 427001 38594880 ~ 38600241 (+)
G1289491 NA other upstream 843239 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2516730 36509078 ~ 36510512 (+)
G1286648 LOC106590042 other upstream 2933846 36035583 ~ 36093396 (+)
G1284354 NA other upstream 4914971 34111807 ~ 34112271 (+)
G1290614 NA other downstream 92852 39126272 ~ 39127009 (+)
G1291464 NA other downstream 1034138 40067558 ~ 40067907 (+)
LOC110490048 il-1racp other downstream 1086849 40089464 ~ 40132600 (+)
G1293072 NA other downstream 2549953 41583216 ~ 41589030 (+)

Expression


Co-expression Network