G1290619


Basic Information

Item Value
gene id G1290619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39136791 ~ 39166202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472877
cctcaatggtgtgtgcttcgctgctcctctgaaagtaagtcatGTATtactttttcatctgacattgtgacatcagtgttacatgaaagttgcttgtcattgttacatgacagtaggttgtcgtaaaacaaggctgcatgaagtgtgaactggagctttcttggatccacaaaaaaattgctttttggAGAATGTGGGCATCGATTGCACTACCTCTCGCTTGCAAAGCAAGCACCCTACCATTTGATCAAATTCCACAGTAAGATTGGAATTGGCACAAGGAGAAACCAatagggtccagtcttgtcaggctaatCTGTTGGTTGCCTTGTTAGTTTACGCGCCAGCACTTGCGGAGGCCGGGTGCATGTCAACAATTGTGCGCTGTAGCCAGTGGACGGTTAGCTCAGTTCAGAGAGTGATGCAAATAACTGCAAGGACATTGGGTTCGGTCCCCGTACTGGCCATGAGGTACATTTTGAGttaggtgaggggtttcttaaatcgctctccctcgagaacggtggtcgttttgaccactaaacaaagagttaaacaaacatagtttggcatgaaatcttcctctacttctctgcttctcacgTTCCAATTGAtagatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggtcaCGAAAACGGCTACAgtttggtagccccgatttgaaatccgcccttttctatgaagagcagagaagcaggggaagattttagcttgcggaacttttttcctaaaaaatgctccgaaagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaaacagctgtaccgtaagttccgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattcactctaacttcttgtctaacttgttgcagtattggtcaaaatagacactgcttgccaaaatgttacagaaactgatgttggtgctgttacttaaactcctgtaacttttgatgcgaatatcatttttgcctccaaactccagatttgagtagcagagaagtagatgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattagctgatttgtgtcaaaaattgcttgatttcacttacaaagaatgccacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacagatatccaaaattctatacaaacaacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttaaacggtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcgagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgtttgttagtgaagagcaggtgattggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagtatttccgcccttgagaagcagagaagtagacgaagttggaacacttgacatgtcttgtctaagtggtagcaaagtggttttattagctgatttgtgtcaaaaatggattgatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagtggaaggaggacataaagaggacaagaaagtgaaatatggaaacagtataacagatatcaaaaattctatacaaactacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttaaacagtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcgagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgttagtgaagagcaggtgtggggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagcgtttccgcccttgagaagcagagaagtagaggaagattttatgccaaactatgtttgtgtaactgtttgtttagtggtcaaaacgatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472877 True 2206 lncRNA 0.42 3 39136791 39166202

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 47155 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 52091 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 280683 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 556035 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 568312 38494289 ~ 38568479 (+)
brca2 NA coding downstream 381142 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 483168 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 746240 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 770684 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 923262 40089464 ~ 40132600 (+)
G1290613 NA non-coding upstream 13718 39122681 ~ 39123073 (+)
G1290549 LOC106590036 non-coding upstream 75543 39037005 ~ 39061248 (+)
G1290550 zc3hf non-coding upstream 103371 39027242 ~ 39033420 (+)
G1290559 NA non-coding upstream 106161 39024349 ~ 39030630 (+)
G1290623 NA non-coding downstream 15034 39181236 ~ 39184267 (+)
G1290624 NA non-coding downstream 20260 39186462 ~ 39224019 (+)
G1290620 NA non-coding downstream 21984 39188186 ~ 39279823 (+)
G1290636 NA non-coding downstream 23280 39189482 ~ 39212790 (+)
G1290621 NA non-coding downstream 74901 39241103 ~ 39292547 (+)
G1290614 NA other upstream 9782 39126272 ~ 39127009 (+)
G1289710 NA other upstream 536550 38594880 ~ 38600241 (+)
G1289491 NA other upstream 952788 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2626279 36509078 ~ 36510512 (+)
G1291464 NA other downstream 901356 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2417171 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2742832 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3598651 42764853 ~ 42767937 (+)

Expression


Co-expression Network