G1290623


Basic Information

Item Value
gene id G1290623
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39181236 ~ 39184267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472908
cctgtaacttttgatgcgaatatcatttttgcctccaaactccagatttgagtagcagagaagtagatgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattagctgatttgtgtcaaaaattgctggatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacagatatccaaaattctatacaaacaacttgatcgagaccgttgtgaatttgttgatattggaacggcatttctagcttatacggtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcaagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgttagtgacgAGCAGGtgtggggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagcatttccgcccttgagaagcagagaagtagaggaagattttatgccaaaatatgtttgtgtaactgtttgtttagtggtcaaaacgatagttgttagggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgacgggttacgaaaacggctataggtacagattggtagccccgatttgaaatccgccctttctatgaagagcagagaagcaggggaagattttagcttgcggaacttttttcctcaaaaatgctccgacagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaagcagctgtaccgtaagttccgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattcactctaacttcttgtctaacttgttgcagtattggtcaaaatagacactgcttgccaaaatgttacagaaactgatgttggtgctgttacttaaactcctgtaacttttgatgcgaatatcatttttgcctccaaactccagatttgagtagcagagaagtagatgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattagctgatttgtgtcaaaaattgctggatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacagatatccaaaattctatacaaacaacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttatacagtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcaagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgttagtgaagagcaggtgtggggtttcttaaatcgctctccatcgagaacggtagacccaattttaaaagcgtttccgcccttgaaaacagagaagtagaggaagattttatgccaaactatgtttgtgtaactgtttgtttagtggtcaaaacgatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggttacgaaaacggctataggtacagattggtagccccgatttgaaatccgcccttttctatgaagagcagagaagcaggggaagattttagcttgcggaacttttttcattaaaaatgctcctaaagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaaacagctgtaccgtaagttccgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472908 True 1989 lncRNA 0.41 2 39181236 39184267

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 91600 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 96536 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 325128 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 600480 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 612757 38494289 ~ 38568479 (+)
brca2 NA coding downstream 363077 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 465103 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 728175 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 752619 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 905197 40089464 ~ 40132600 (+)
G1290619 NA non-coding upstream 15034 39136791 ~ 39166202 (+)
G1290613 NA non-coding upstream 58163 39122681 ~ 39123073 (+)
G1290549 LOC106590036 non-coding upstream 119988 39037005 ~ 39061248 (+)
G1290550 zc3hf non-coding upstream 147816 39027242 ~ 39033420 (+)
G1290624 NA non-coding downstream 2195 39186462 ~ 39224019 (+)
G1290620 NA non-coding downstream 3919 39188186 ~ 39279823 (+)
G1290636 NA non-coding downstream 5215 39189482 ~ 39212790 (+)
G1290621 NA non-coding downstream 56836 39241103 ~ 39292547 (+)
G1290627 NA non-coding downstream 57894 39242161 ~ 39262660 (+)
G1290614 NA other upstream 54227 39126272 ~ 39127009 (+)
G1289710 NA other upstream 580995 38594880 ~ 38600241 (+)
G1289491 NA other upstream 997233 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2670724 36509078 ~ 36510512 (+)
G1291464 NA other downstream 883291 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2399106 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2724767 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3580586 42764853 ~ 42767937 (+)

Expression


Co-expression Network