G1290622


Basic Information

Item Value
gene id G1290622
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39296293 ~ 39301777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472906
acggcattagcatgagagcaacttaccagtccaaaacgatgtcctctccgttcaaaaaatatgccTCAGTTTCAGAATCGAAACTATGGGAGCTAATGGAGTCTTCAATCTCTGCcaaatctgtctcactttcccggtCAATCTCTTCCAAAATCATTTCTACATTCGTGTATCTAGTCTTAGAGGTCGCTTTCttagacttatttgccattttaTTCGCGAAATAAACAGTTGAAGTAGCAAATTACTGAAAAACGTCTGTGCGTAATTAGAGTCACTCCTTCACGGTTCAATTGGCAATGGCGAAAGAACGGTCTTTACGCCAGAGTCCAGTGAATAGGTTTGTCTTACAACAATGAATCATGGGATATTTCCAGTTACAtctgctcattggctatctacccagctagatttcaagaagatcagtggtcattgggttaaaatagaGTCAATCAACAAGACAGTGGTCATATAATTGCTGCGCAATGGGCTCCTCACGTGTTGTCTTCCAATCGGTATTACCATATCAATAGAGCCCGCAAAATGGCCCATCAGGGTTGATTGCGTTCCAAACAAAGAGTTGATTGCAAgtaaaccaaacatgactggaaagagagggaaaagacGAGGAAAAGAGAGTCTCTTTACGTTGGACGTTACTTTGAAAATTGTATGACAGGAAATTCAACGAGATAagcgttcacaaaatgtttcgtgttaggctataaaacatGGATTTAACCGAacaaacgaccattcattgtgtaacaatgagccttgggattgcaaccagagcaagatcttcaaaggtaaacgatttatttCAATGCAATCTGTGACTTTGTTACGCAAGTGCTGGTTGAATAAGTAGTTTGATATGGGGGTCTATGCTCAGATAAACGCAGCTTATTATTTCgcaataaattattttttaaatatgacaacgcagttggattagcaagattctaggcttttgaagcatgtgagacacttgtattttcatgaatgtttaatatgactatttgtgGCGAACACCGTATGTTGTTGAattcaaacccggatccgggatcggtagatcagagaggttaactgatttgtgtaaaaaatagcttgatttcacttacaaagaatgtcacttggaagtgatgatatcacaatggggcacttacgtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacggaaacagtataacagatatccaaaattctatagaaacaacttgatcgagaccgttgcgaatttgttaatattggaacggcatttctagcttaaacggtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcgagtatcctaaaccaacggttccgttttggaatatcagaattgacacagagagctgttagtgaagagcaggtgagaggtttcttaaatcgctctccctcgagaacggtagtcccaattttaaaagcgtttccgcccttgagaagcagagaagtagaggaagattttatgccaaaatatgtttgtgtaactgtttgtttagtggtcaaaacgataattgtttgggaaagtaataaattaccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggttacgaaaacggctataggtacagattggtaaccccgatttgaaatccgcccttttctatgaagagcagagaagcagggaagattttagcttgcggaacaattttcctcaaaaatgctccgaaagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaaacagctgtaccgtaagttctgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattcactctaacttcttgtctaacttgttgcagtattggtcaaaatagacactgcttgccaaaatgttacagaaactgatgttggtgctgttacttaaactcctgtaacttttgatgtgaatatcatttttgcctccaaactccagatttgagtaacagagaagtagacgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattaactgattgatttgtgtaaaaaatagcttgatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgcgtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacggaaac

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472906 True 2299 lncRNA 0.40 2 39296293 39301777

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 206657 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 211593 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 440185 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 715537 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 727814 38494289 ~ 38568479 (+)
brca2 NA coding downstream 245567 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 347593 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 610665 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 635109 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 787687 40089464 ~ 40132600 (+)
G1290621 NA non-coding upstream 3746 39241103 ~ 39292547 (+)
G1290620 NA non-coding upstream 16470 39188186 ~ 39279823 (+)
G1290627 NA non-coding upstream 33633 39242161 ~ 39262660 (+)
G1290624 NA non-coding upstream 72274 39186462 ~ 39224019 (+)
G1290636 NA non-coding upstream 83503 39189482 ~ 39212790 (+)
G1290653 NA non-coding downstream 668 39302445 ~ 39367387 (+)
G1290654 NA non-coding downstream 13353 39315130 ~ 39333444 (+)
G1290675 NA non-coding downstream 77371 39379148 ~ 39429457 (+)
G1290678 NA non-coding downstream 127749 39429526 ~ 39498152 (+)
G1290715 NA non-coding downstream 212698 39514475 ~ 39537263 (+)
G1290614 NA other upstream 169284 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 258634 39037005 ~ 39061248 (+)
G1289710 NA other upstream 696052 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1112290 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2785781 36509078 ~ 36510512 (+)
G1291464 NA other downstream 765781 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2281596 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2607257 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3463076 42764853 ~ 42767937 (+)

Expression


Co-expression Network