G1290653


Basic Information

Item Value
gene id G1290653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39302445 ~ 39367387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472958
attttttatATCtattatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaatttctgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatcagtttctgtaacattttgtcaagcagtgtctgttttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttatggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaaattctgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggataccaatctgtaactctagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaattatgccagcagcaaggcaatatattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagtttgaaataaaatcttcctctacttctctgcttctcaagggcggaaacacttttaaaattgTGTCTACCGTtgtcgagggagagcgatttaagaaacccctcacctgctcttcactaacagccctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacacacctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcacttccaaatgacattctttccaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatatttgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtt
>TU1472959
attttttatATCtattatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaatttctgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatcagtttctgtaacattttggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatatttgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttatgaccactttaggagcatttttggggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgttttcgtaacccatcgcctcaatttcaagtgtctgtaaattatgccagcagcaaggcaatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagttcagcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctatcgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgagg
>TU1472962
ctattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgcgtctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattttgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttctgtttttcactttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccactttgcaaccacttagagaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctggaacattttggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgcacttcatagaaaagggcggatttcaaattgGGGCTACCAATCTGTCACTCTAGCCGtattcgtaacccatcgcctcactttcaagtgtctgtaaattatgccagcagcaaggcaatttattactttcccaaacaactattgtttagaccactaaacaaagagttacacaaacatagtttggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctaccgttctcgagggagggcgatttaagaaaccactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggccaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacactgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttctgtttttcactttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaattttttgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttgggggaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtttctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttctgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttGTAActcatcgcctcactttcaagtgtctgtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgcgcctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagcgccaaaatcatgaggagacactcctccgacaccgtttaagctaaaaatgccgttccaatatcaacaaattggcaacggtctcgatcaagttgtttgtatagaattttggatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttcaagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgggtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcataggctaccaatctgtaactctagctgtttttgtaacccatcgcctcactttcaagtgtctgtaaattatgccagcagcaagactatttattactttcccaaacaactattgttttgagcACTAAACAAAGAGttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgcgtctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctccgacaccgtttaagctaaaaatgccgttccaatatcaacaaattggcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttcaagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaattatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgggtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttgtaacccatcgcctcactttcaagtgtcggtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagtttggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctacagttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaattggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcttccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttgggggaaaaatgatattcgcatcaaaagttacatgagtttaagtatcagcaccatcatcagtttctgtaacattttggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcaga
>TU1472963
ttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttgtaacccatcgcctcactttcaagtgtcggtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaactcTTCTAAAATtgcgtctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcaggcccaaaatcatgaggagacactcctccgacaccgtttaagctaaaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttccagcttcgtatacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattctgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttgtaacccatcgcctcactttcaagtgtcggtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaactcTTCTAAAATTGCGTCTAcagttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacacacctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatatttgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatatttgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttgtcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttgtaacccatcgcctcactttcaagtgtcggtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaactcTTCTAAAATtgcgtctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacacacctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatatttgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatatttgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttatgaccactttaggagcatttttggggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgttttcgtaacccatcgcctcaatttcaagtgtctgtaaattatgccagcagcaaggcaatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagttcagcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctatcgttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472958 False 1552 lncRNA 0.39 3 39302445 39342176
TU1472959 False 971 lncRNA 0.40 2 39302445 39356290
TU1472962 False 4998 lncRNA 0.40 4 39316680 39367387
TU1472963 True 3586 lncRNA 0.41 2 39334658 39356290

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 212809 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 217745 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 446337 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 721689 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 733966 38494289 ~ 38568479 (+)
brca2 NA coding downstream 179957 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 281983 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 545055 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 569499 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 722077 40089464 ~ 40132600 (+)
G1290622 NA non-coding upstream 668 39296293 ~ 39301777 (+)
G1290621 NA non-coding upstream 9898 39241103 ~ 39292547 (+)
G1290620 NA non-coding upstream 22622 39188186 ~ 39279823 (+)
G1290627 NA non-coding upstream 39785 39242161 ~ 39262660 (+)
G1290624 NA non-coding upstream 78426 39186462 ~ 39224019 (+)
G1290675 NA non-coding downstream 11761 39379148 ~ 39429457 (+)
G1290678 NA non-coding downstream 62139 39429526 ~ 39498152 (+)
G1290715 NA non-coding downstream 147088 39514475 ~ 39537263 (+)
G1290717 NA non-coding downstream 173513 39540900 ~ 39541181 (+)
G1290718 NA non-coding downstream 176791 39544178 ~ 39544537 (+)
G1290614 NA other upstream 175436 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 264786 39037005 ~ 39061248 (+)
G1289710 NA other upstream 702204 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1118442 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2791933 36509078 ~ 36510512 (+)
G1291464 NA other downstream 700171 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2215986 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2541647 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3397466 42764853 ~ 42767937 (+)

Expression


Co-expression Network