G1290654


Basic Information

Item Value
gene id G1290654
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39315130 ~ 39333444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1472965
gctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacatttcggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacagtacggctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacgatcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatctacCCCTGCTTCTCtactcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaattatgccagcagcaaggcaatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagtttggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctaccgttctcgagggagagcgatttaagaaacccctcacctgctcttcaccagcagctctctgtgtcaattctgatatttcaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacacacctgcgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctcctgccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagagacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtatacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattctgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccgcaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgtttttgtaacccatcgcctcactttcaagtgtcggtaaattatgccagcagcaaggctatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagattggcataaaatcttcctctacttctctgcttctcaagggcggaaactcTTCTAAAATTGCGTCTAcagttctcgagggagagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacacacctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcagtttcttgtcctctttatgtcctccttccgctttcaatggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaaatgacattctttgtaagtgaaatcaagcaacttttgacacaaatcagctaataaaaccattttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggagggaAAAATGATAtttgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttgtcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1472965 True 2285 lncRNA 0.40 2 39315130 39333444

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 225494 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 230430 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 459022 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 734374 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 746651 38494289 ~ 38568479 (+)
brca2 NA coding downstream 213900 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 315926 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 578998 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 603442 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 756020 40089464 ~ 40132600 (+)
G1290622 NA non-coding upstream 13353 39296293 ~ 39301777 (+)
G1290621 NA non-coding upstream 22583 39241103 ~ 39292547 (+)
G1290620 NA non-coding upstream 35307 39188186 ~ 39279823 (+)
G1290675 NA non-coding downstream 45704 39379148 ~ 39429457 (+)
G1290678 NA non-coding downstream 96082 39429526 ~ 39498152 (+)
G1290715 NA non-coding downstream 181031 39514475 ~ 39537263 (+)
G1290717 NA non-coding downstream 207456 39540900 ~ 39541181 (+)
G1290718 NA non-coding downstream 210734 39544178 ~ 39544537 (+)
G1290614 NA other upstream 188121 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 277471 39037005 ~ 39061248 (+)
G1289710 NA other upstream 714889 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1131127 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 2804618 36509078 ~ 36510512 (+)
G1291464 NA other downstream 734114 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2249929 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2575590 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3431409 42764853 ~ 42767937 (+)

Expression


Co-expression Network