G1290715


Basic Information

Item Value
gene id G1290715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39514475 ~ 39537263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1473033
ggactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttggcaagcagtgtctattttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccacaagctaaaattttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggatACCAATCTGTAAttctagccgttttcgtaacccatcgcctcactttcaagtgtctacaaattatgccagcagcaaggcaatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagtttggcataaaatcttcctctacttctctgcttctcaagggcggaaacgcttttaaaattgggtctaccgttctcgagggacagcgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtgaaatcaagcaatttttgacacacatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctacacaaatctggagtttggaggcaaaaatgatattcgcatcaaaagttacaggagtttaagtatcagcaccatcatcagtttctgtaacattttggcaagcagtgtctgttttgaccaatactgcaacaagttagacaagaagttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgtttttcaaccttcccaaacaacggtcgttttgaccactttaggagcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggcggatttcaaatcggggctaccaatctgtaactctagccgttttcgtaacccatcgacctcactttcaagtgtctacaaattatgccagcagcaaggcaatttattactttcccaaacaactattgttttgaccactaaacaaagagttacacaaacatagtttggcataaaatcttcctctgcttctcaagggcggaaacgcttttaaaattgggtctaccgttctcgagggacaacgatttaagaaacccctcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggctaggatactcgcagacgctgcagggccaaagtcatgaggagacactcctccgacaccgtttaagctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatttttgatatctgttatactgtttccgtttttcactttcttttcctctttatgtcctccttccgctttcattggatgtCTCAaaaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagtcaAATCAAGcatttttttacacaaatcagctaataaaaccactttgcaaccacttagacaagacatgtcaagttgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaaaatgatatttgcatcaaaagttacaggagtttaaatcatgtttgatgaactctggatgttaaaaaaaaaattatgcttATTCGAGATGATATGAACACTGTGgtcaattttcagcaagttgcaacatacAGAAATTAGCAAGTttacataaacaagctctaaatcctgtttgatgcactctggatgtccaatctttgctgtgctgtctatttgagatgaaatgaacactgtggacagttttcagcaagttacaacattgaaatacagaaataaccacttttccataaacaagctctaaatcatgtttgatgcactctggatgtccaatttttgctgtgctgtctattcgAGATGTAAGGGGCCTAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1473033 True 2650 lncRNA 0.40 2 39514475 39537263

Neighbor

gene id symbol gene type direction distance location
LOC110490841 NA coding upstream 424839 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 429775 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 658367 38855250 ~ 38856108 (+)
LOC110490039 LOC106590018 coding upstream 933719 38576635 ~ 38580756 (+)
LOC110490038 LOC106590019 coding upstream 945996 38494289 ~ 38568479 (+)
brca2 NA coding downstream 10081 39547344 ~ 39589108 (+)
LOC110490049 LOC106612364 coding downstream 112107 39649370 ~ 39684044 (+)
LOC110490050 LOC106612350 coding downstream 375179 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 399623 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 552201 40089464 ~ 40132600 (+)
G1290678 NA non-coding upstream 16323 39429526 ~ 39498152 (+)
G1290675 NA non-coding upstream 85018 39379148 ~ 39429457 (+)
G1290653 NA non-coding upstream 147088 39302445 ~ 39367387 (+)
G1290654 NA non-coding upstream 181031 39315130 ~ 39333444 (+)
G1290622 NA non-coding upstream 212698 39296293 ~ 39301777 (+)
G1290717 NA non-coding downstream 3637 39540900 ~ 39541181 (+)
G1290718 NA non-coding downstream 6915 39544178 ~ 39544537 (+)
G1290719 NA non-coding downstream 7676 39544939 ~ 39545320 (+)
G1290723 NA non-coding downstream 12224 39549487 ~ 39550057 (+)
G1290614 NA other upstream 387466 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 476816 39037005 ~ 39061248 (+)
G1289710 NA other upstream 914234 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1330472 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 3003963 36509078 ~ 36510512 (+)
G1291464 NA other downstream 530295 40067558 ~ 40067907 (+)
G1293072 NA other downstream 2046110 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2371771 41909034 ~ 41909611 (+)
G1294319 NA other downstream 3227590 42764853 ~ 42767937 (+)

Expression


Co-expression Network