G1290883


Basic Information

Item Value
gene id G1290883
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39869833 ~ 39874630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1473221
TCTCCTTGTCCTTCTGCTGAATCTGGTGGTACAGCTCAATCACACTCTGGGCCAGCTGCTGTGCtttttcgttgttcatttgtttcattctcaaccaggatttcatcatacatgtcaaacAGTGAGGTTTCAGCTGTCAGTCCGTGGGTCCTCATCCTCGGTGTGTACTGTCACTGTCCGTTTCCATCTCGTCCAGCTGTGTcgaacatttcacgtaaaccctgtttgtctgcatcgaagtagcggttCTTGTAC

Function

NR:

description
PREDICTED: autophagy-related protein 16-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1473221 True 255 lncRNA 0.48 2 39869833 39874630

Neighbor

gene id symbol gene type direction distance location
LOC110490049 LOC106612364 coding upstream 185789 39649370 ~ 39684044 (+)
brca2 NA coding upstream 280725 39547344 ~ 39589108 (+)
LOC110490841 NA coding upstream 780197 39086859 ~ 39089636 (+)
LOC110490726 LOC106600248 coding upstream 785133 39082814 ~ 39084700 (+)
LOC110490723 LOC106612786 coding upstream 1013725 38855250 ~ 38856108 (+)
LOC110490050 LOC106612350 coding downstream 37812 39845713 ~ 39929225 (+)
LOC110490053 fgf12 coding downstream 62256 39936886 ~ 40053076 (+)
LOC110490048 il-1racp coding downstream 214834 40089464 ~ 40132600 (+)
tfdp2 LOC105026801 coding downstream 1155746 41030376 ~ 41088538 (+)
LOC110490065 LOC106580667 coding downstream 1218900 41093530 ~ 41156857 (+)
G1290880 NA non-coding upstream 29683 39839948 ~ 39840150 (+)
G1290874 NA non-coding upstream 36069 39833488 ~ 39833764 (+)
G1290871 NA non-coding upstream 38220 39831325 ~ 39831613 (+)
G1290868 NA non-coding upstream 40532 39829098 ~ 39829301 (+)
G1290867 NA non-coding upstream 42149 39827458 ~ 39827684 (+)
G1290849 NA non-coding downstream 10993 39885623 ~ 39894862 (+)
G1291447 NA non-coding downstream 184328 40058958 ~ 40059184 (+)
G1291457 NA non-coding downstream 189640 40064270 ~ 40064490 (+)
G1291466 NA non-coding downstream 193851 40068481 ~ 40068826 (+)
G1290614 NA other upstream 742824 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 832174 39037005 ~ 39061248 (+)
G1289710 NA other upstream 1269592 38594880 ~ 38600241 (+)
G1289491 NA other upstream 1685830 38183436 ~ 38184003 (+)
G1287489 LOC106590045 other upstream 3359321 36509078 ~ 36510512 (+)
G1291464 NA other downstream 192928 40067558 ~ 40067907 (+)
G1293072 NA other downstream 1708743 41583216 ~ 41589030 (+)
G1293295 NA other downstream 2034404 41909034 ~ 41909611 (+)
G1294319 NA other downstream 2890223 42764853 ~ 42767937 (+)

Expression


Co-expression Network