G1292170


Basic Information

Item Value
gene id G1292170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 40633181 ~ 40633429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1474627
ctatacagtggcaagaaaaagtatgcgaACCCTtaggaaatacctggatttctgcataaattggtcataaaatttgatctgatcttcatctaggtcacaacaatagacaaacacagtctgcttaaactaataacacacacaattatatgttttcatgtctttattgaacacaccatgcaaatattcacagtgcagggtggaaaagtaTGTTAAcacttggatttaataactggttgaccctccaataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1474627 True 249 lncRNA 0.35 1 40633181 40633429

Neighbor

gene id symbol gene type direction distance location
LOC110490048 il-1racp coding upstream 500581 40089464 ~ 40132600 (+)
LOC110490053 fgf12 coding upstream 580105 39936886 ~ 40053076 (+)
LOC110490050 LOC106612350 coding upstream 703956 39845713 ~ 39929225 (+)
LOC110490049 LOC106612364 coding upstream 949137 39649370 ~ 39684044 (+)
brca2 NA coding upstream 1044073 39547344 ~ 39589108 (+)
tfdp2 LOC105026801 coding downstream 396947 41030376 ~ 41088538 (+)
LOC110490065 LOC106580667 coding downstream 460101 41093530 ~ 41156857 (+)
trnap-ugg-11 NA coding downstream 603557 41236986 ~ 41237057 (+)
trnap-ugg-12 NA coding downstream 605427 41238856 ~ 41238927 (+)
trnap-ugg-13 NA coding downstream 606362 41239791 ~ 41239862 (+)
G1292168 NA non-coding upstream 1893 40631069 ~ 40631288 (+)
G1292165 NA non-coding upstream 4020 40628919 ~ 40629161 (+)
G1292160 NA non-coding upstream 13847 40619116 ~ 40619334 (+)
G1292107 NA non-coding upstream 52272 40580669 ~ 40580909 (+)
G1292092 NA non-coding upstream 63995 40568983 ~ 40569186 (+)
G1292171 NA non-coding downstream 2014 40635443 ~ 40635653 (+)
G1292172 NA non-coding downstream 4949 40638378 ~ 40638607 (+)
G1292175 NA non-coding downstream 6818 40640247 ~ 40640490 (+)
G1292178 NA non-coding downstream 10785 40644214 ~ 40644468 (+)
G1292181 NA non-coding downstream 13228 40646657 ~ 40646910 (+)
G1291464 NA other upstream 565274 40067558 ~ 40067907 (+)
G1290614 NA other upstream 1506172 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 1595522 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2032940 38594880 ~ 38600241 (+)
G1293072 NA other downstream 949944 41583216 ~ 41589030 (+)
G1293295 NA other downstream 1275605 41909034 ~ 41909611 (+)
G1294319 NA other downstream 2131424 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2963495 43596924 ~ 43597464 (+)
G1295730 NA other downstream 3282749 43916178 ~ 43916479 (+)

Expression


Co-expression Network