G1292620


Basic Information

Item Value
gene id G1292620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 40997238 ~ 40997788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1475101
ACTTTGGGTATTTCgggggttgcatgctatcagataatagcttctcatgcttttgccgaaaagcattttaaaaatctgacatgttggctagattcacaacgagtgtagctttaattgagtaccctgcatgtgtgttttaatgaaagtttgagttgtatcgagtactattagttgtcactctgaaatttccgctgatgttgatccctgtacagcaggggtgtcaaagtcaaatggacggagggccaaataaaaaaatcagctacaagacgagggccggactgttcgaatgttcattgaaaaaaatttaaatgacgcatatagtctagtgaacctaattgaacctactgaaaacctaacaaatatattacaatatgatcagataaataaagcaatattttcttatggctctgtcagtaatctttaattttcaacagacacaaaagacaaatttcctttatataaatatccccataacatgaacattaaatgaaagaaaccggtattcaaggcaccatcagtagactatattttctattttagcaaaagtgggc

Function

NR:

description
PREDICTED: CUB and zona pellucida-like domain-containing protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1475101 True 551 lncRNA 0.35 1 40997238 40997788

Neighbor

gene id symbol gene type direction distance location
LOC110490048 il-1racp coding upstream 864638 40089464 ~ 40132600 (+)
LOC110490053 fgf12 coding upstream 944162 39936886 ~ 40053076 (+)
LOC110490050 LOC106612350 coding upstream 1068013 39845713 ~ 39929225 (+)
LOC110490049 LOC106612364 coding upstream 1313194 39649370 ~ 39684044 (+)
brca2 NA coding upstream 1408130 39547344 ~ 39589108 (+)
tfdp2 LOC105026801 coding downstream 32588 41030376 ~ 41088538 (+)
LOC110490065 LOC106580667 coding downstream 95742 41093530 ~ 41156857 (+)
trnap-ugg-11 NA coding downstream 239198 41236986 ~ 41237057 (+)
trnap-ugg-12 NA coding downstream 241068 41238856 ~ 41238927 (+)
trnap-ugg-13 NA coding downstream 242003 41239791 ~ 41239862 (+)
G1292613 NA non-coding upstream 4304 40992687 ~ 40992934 (+)
G1292609 NA non-coding upstream 9615 40987421 ~ 40987623 (+)
G1292380 NA non-coding upstream 30173 40963786 ~ 40967065 (+)
G1292372 NA non-coding upstream 41542 40949617 ~ 40955696 (+)
G1292306 NA non-coding upstream 69111 40851335 ~ 40928127 (+)
G1292629 NA non-coding downstream 7521 41005309 ~ 41005619 (+)
G1292683 NA non-coding downstream 48314 41046102 ~ 41052443 (+)
G1292767 NA non-coding downstream 164906 41162694 ~ 41163121 (+)
G1292771 NA non-coding downstream 170339 41168127 ~ 41168355 (+)
G1292773 NA non-coding downstream 172381 41170169 ~ 41170519 (+)
G1291464 NA other upstream 929331 40067558 ~ 40067907 (+)
G1290614 NA other upstream 1870229 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 1959579 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2396997 38594880 ~ 38600241 (+)
G1293072 NA other downstream 585585 41583216 ~ 41589030 (+)
G1293295 NA other downstream 911246 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1767065 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2599136 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2918390 43916178 ~ 43916479 (+)

Expression


Co-expression Network