G1292939


Basic Information

Item Value
gene id G1292939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41258881 ~ 41385174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1475448
aactgaaacctggtcaactgcttggaagatagctatgctcacaagtataccaccaacactcacgtgatccactgtggcctggcaacatcgacctgtcaatgcatattctcaccgtcattgctggcgactgcaaaacaatatcttgaaataaatggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagcccatgtgtagagcctttaacaaatctgaaagaggcggttcttgggcaacagtttggagtgcagaccaaggtggatgagtgataaaggcaatggattgctaatccattgtgctctgcactcgtgggttcagcatcgcacagcatttattcatttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1475448 True 377 lncRNA 0.48 2 41258881 41385174

Neighbor

gene id symbol gene type direction distance location
trnap-ugg-29 NA coding upstream 694 41258116 ~ 41258187 (+)
trnap-ugg-28 NA coding upstream 1612 41257198 ~ 41257269 (+)
trnap-ugg-27 NA coding upstream 2547 41256263 ~ 41256334 (+)
trnap-ugg-26 NA coding upstream 3482 41255328 ~ 41255399 (+)
trnap-ugg-25 NA coding upstream 4417 41254393 ~ 41254464 (+)
trnap-cgg-95 NA coding downstream 653 41385827 ~ 41385898 (+)
trnap-cgg-96 NA coding downstream 1527 41386701 ~ 41386772 (+)
trnap-cgg-97 NA coding downstream 2402 41387576 ~ 41387647 (+)
trnap-cgg-98 NA coding downstream 3276 41388450 ~ 41388521 (+)
trnap-cgg-99 NA coding downstream 4151 41389325 ~ 41389396 (+)
G1292932 NA non-coding upstream 23862 41234547 ~ 41235019 (+)
G1292922 NA non-coding upstream 33109 41225537 ~ 41225772 (+)
G1292792 NA non-coding upstream 61104 41197095 ~ 41197777 (+)
G1292775 LOC106612405 non-coding upstream 81818 41176206 ~ 41177063 (+)
G1292774 NA non-coding upstream 83161 41175464 ~ 41175720 (+)
trnap-cgg-114 NA non-coding downstream 21799 41406973 ~ 41407518 (+)
trnap-cgg-115 NA non-coding downstream 22674 41407848 ~ 41408132 (+)
trnap-cgg-116 NA non-coding downstream 23575 41408749 ~ 41409089 (+)
trnap-cgg-127 NA non-coding downstream 33834 41419008 ~ 41419424 (+)
trnap-cgg-152 NA non-coding downstream 59052 41444226 ~ 41444783 (+)
LOC110490048 il-1racp other upstream 1128147 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1190974 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2131872 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2221222 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2658640 38594880 ~ 38600241 (+)
G1293072 NA other downstream 198199 41583216 ~ 41589030 (+)
G1293295 NA other downstream 523860 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1379679 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2211750 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2531004 43916178 ~ 43916479 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G192043 NA non-coding NC_047606.1 CM018552.1 6778164 ~ 6785596 (+)