G1293020


Basic Information

Item Value
gene id G1293020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41512075 ~ 41512941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1475543
atctacatttagctctttcttcatttgtttcttgctgttacagctaatgaagattgaatctgaaagactcagcagatgaattacagagtatttgaactgaaacctgatcAACTGCtttgaagatagctatgctcaaaaagtataccaccaacactcacttgattcactgtggcctggcaccatcgacctgtcaatccaaatcctcaccgtcattgctggcgactgcaaaaaaTACCATAGAGAaagtggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtacaggattcaaatcccggatgagcccattTGTAGAGCTTTTAACAATCAGAGacaggcggttcttgggcaactggttggagtgctgaacgaggtggatgagtgctgaacgaggtggatgagtgataaaggcaatggacagctaatccattgtgctctgcactcgtgggttcagcatcgcacaacatttattcatttcttccttggttaaaaaatctgtcattttaacctgtacatagattaccttcagacgagtcccgtgacccttgtggaggtcgtagagcaaaactgagaaggacattgtgtttgtgagagtctcccctttccatgtaatggtcaaacgattttgtaggtcaaaccggtcaggaagctacagccatttgtatgagaagacacattttcgggatatgtcatgttttgactaacattgctctcgctctgccgcatttcaccaaagatgcagaggtgtgacatcagcggttatggaggtttgagaagcatccagtgcaaaaaaagtgacatttctagtttaaaacagacagattccaatggggattttttattttattcatgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1475543 True 867 lncRNA 0.43 1 41512075 41512941

Neighbor

gene id symbol gene type direction distance location
trnap-cgg-201 NA coding upstream 4292 41507712 ~ 41507783 (+)
trnap-cgg-200 NA coding upstream 5206 41506798 ~ 41506869 (+)
trnap-cgg-199 NA coding upstream 19842 41492162 ~ 41492233 (+)
trnap-cgg-198 NA coding upstream 21672 41490332 ~ 41490403 (+)
trnap-cgg-197 NA coding upstream 22587 41489417 ~ 41489488 (+)
trnap-cgg-202 NA coding downstream 3004 41515945 ~ 41516016 (+)
trnap-cgg-203 NA coding downstream 12021 41524962 ~ 41525033 (+)
trnap-cgg-204 NA coding downstream 14689 41527630 ~ 41527701 (+)
trnap-cgg-205 NA coding downstream 20829 41533280 ~ 41533841 (+)
trnap-cgg-206 NA coding downstream 22680 41535621 ~ 41535692 (+)
G1293019 NA non-coding upstream 1365 41510187 ~ 41510710 (+)
trnap-cgg-152 NA non-coding upstream 67292 41444226 ~ 41444783 (+)
trnap-cgg-127 NA non-coding upstream 92651 41419008 ~ 41419424 (+)
trnap-cgg-116 NA non-coding upstream 102986 41408749 ~ 41409089 (+)
trnap-cgg-115 NA non-coding upstream 103943 41407848 ~ 41408132 (+)
G1293025 NA non-coding downstream 15529 41528470 ~ 41529058 (+)
G1293027 NA non-coding downstream 16226 41529167 ~ 41529827 (+)
G1293045 NA non-coding downstream 31957 41544898 ~ 41545622 (+)
G1293056 NA non-coding downstream 40593 41553534 ~ 41553948 (+)
LOC110490048 il-1racp other upstream 1381341 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1444168 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2385066 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2474416 39037005 ~ 39061248 (+)
G1289710 NA other upstream 2911834 38594880 ~ 38600241 (+)
G1293072 NA other downstream 70432 41583216 ~ 41589030 (+)
G1293295 NA other downstream 396093 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1251912 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 2083983 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2403237 43916178 ~ 43916479 (+)

Expression


Co-expression Network