G1293074


Basic Information

Item Value
gene id G1293074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41625061 ~ 41626045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1475604
ataaaaaaataatcacatttacaagtattcagaccctttactcagtgctttgttgaagcacatttggcagcgattacagccttgagtcttcttgagtatgacgctacaagcttggcacacctgtattttttttctctgcaaatcctcttaagctctgtcaggttggatggggagtgttgctgcacagctattttcaggtctctccagagatgtttgatggggttcaagtctgggctcctgctgggccactcctgcgttgtcttagctgtgtgcttagggtcgttgtcctgttgggaggGTGAACCTTCGCCgcagtctgaggtactgagcactctggagcaggttttcttcaaggatctctctgtactttactccgttcatctttccctcgatcctgacttagTCCCTCCCACTGAAatatatccccacagcatgatgctgccaccaccatgcttcaccgtagggaaggtgtcaggtttcctccaaacatgacgcttggcattcagaccaaaaatttcaatcttggtttcatcagaccagagagtcctttaggctgtcgtgccttttactgaggagtggcttccgtctggctgcagatatggttgtccttctggaaggttctcccatcttcacagaggaactctggagctctgtcagagtggccaccTGGTTGTTgttcacctcccagaccaaggcccttctcccccgattgctcagtttggccgggcgtccagctctaggaacagtcttggtggtttcaaacgtcttccatttaagaatgatggagggtacttttaatgctgcagacattttttttgtacccttccccagatctgtgcctcgacacaatcctgtctcggagatctacagacaattattttgacctcatggcttggtttttcctctgacaactgtgggacatttatatagacaggtttgtgcctttccaaatcatgcccaatcaattgataATTATTTGCATCGT

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1475604 True 985 lncRNA 0.47 1 41625061 41626045

Neighbor

gene id symbol gene type direction distance location
LOC110490072 LOC106612410 coding upstream 21 41588463 ~ 41625040 (+)
LOC110490073 NA coding upstream 36941 41583335 ~ 41588120 (+)
LOC110490071 clrn1 coding upstream 57210 41557648 ~ 41567851 (+)
trnap-cgg-207 NA coding upstream 87566 41537424 ~ 41537495 (+)
trnap-cgg-206 NA coding upstream 89369 41535621 ~ 41535692 (+)
iqcg iqcg coding downstream 184198 41810243 ~ 41836130 (+)
LOC110490081 LOC106580643 coding downstream 299129 41925174 ~ 41951832 (+)
LOC118938919 NA coding downstream 393431 42019476 ~ 42023326 (+)
LOC110490085 LOC106612498 coding downstream 413909 42039954 ~ 42054610 (+)
LOC110490086 LOC106612440 coding downstream 528246 42154291 ~ 42255013 (+)
G1293079 NA non-coding upstream 14221 41610133 ~ 41610840 (+)
G1293089 NA non-coding upstream 32420 41592018 ~ 41592641 (+)
G1293072 NA non-coding upstream 36031 41583216 ~ 41589030 (+)
G1293084 NA non-coding upstream 46845 41577829 ~ 41578216 (+)
G1293056 NA non-coding upstream 71113 41553534 ~ 41553948 (+)
G1293077 NA non-coding downstream 77 41626122 ~ 41626379 (+)
G1293169 NA non-coding downstream 107431 41733476 ~ 41735494 (+)
G1293174 NA non-coding downstream 114301 41740346 ~ 41749693 (+)
G1293224 LOC106612432 non-coding downstream 179644 41805689 ~ 41810172 (+)
G1293261 NA non-coding downstream 236171 41862216 ~ 41866725 (+)
LOC110490048 il-1racp other upstream 1494327 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1557154 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2498052 39126272 ~ 39127009 (+)
G1290549 LOC106590036 other upstream 2587402 39037005 ~ 39061248 (+)
G1293295 NA other downstream 282989 41909034 ~ 41909611 (+)
G1294319 NA other downstream 1138808 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1970879 43596924 ~ 43597464 (+)
G1295730 NA other downstream 2290133 43916178 ~ 43916479 (+)
G1295845 NA other downstream 2403391 44029436 ~ 44029861 (+)

Expression


Co-expression Network