G1293626 (LOC106612439)


Basic Information

Item Value
gene id G1293626
gene name LOC106612439
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42041113 ~ 42042826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1476212
CCTTTATTTAAGACATTCCTGAATGTCAGCTGCATTTGTTATCAGAGTGGTATTCAAAGAACAATACAAAGACCGTGTGACAAACATATGAAAAAATATCCTTTAAAACAAATACAGAAAAAACATAATTCACTCGCTACCAACCCAGAAATCTGATTTGAGAGTTGCACACCTAAAGGAAAGTTATTACTTCCATTGTGATTTATAATCTGCCAAAGCAGTTACAGGCATGGGCAGGAAAAAAGGGCTACTACAAGAACAAAAACAAGACATGTAGTGTTACCTTTAACCGGTTAGGGAGCATTAAAACATTAAATATACACACAGCTTAATGTGTTCTCGTTGTGTCTGGGTCTGTTCGGAGATGTAAAGTGTGTACAATAGGGTTACATAGCGTTAAACAAGAATGTAGCCTCCAACAGCAGGGAGGCTACTCGTCATCATCCTCATCGTCATCCTCCTCATCATCTTCATCGTCGTCGTCATCAGCAGCTGCGGAGGAGGCAGTATCCACTCTACCATTGGTGCGGTATGATGCAATCCTTGTCGTATTTCTCCTTCAGCGTGGCTGCCTTCTTCTCGTACGGCTTCTTCTCCTCAGCTGCAGAGCTGTTCCACATCACTCCCAGCTTCTTAGCAGTGTCTCCAATGGACAGGCCTGGGTGCTCGCTCTTTATCTTGGCCCGGAAGTCAGCACAGAAGATGAAGAACGCAGACCtgagaaacaaaacaaacacatgtCAATTCAAAGGGAAGTTTAATTCCCCTCTCGGATTGCTATCCAGTCTATCTGTCATGCAAACCTTGTGAATTATGGTACATACGGCGGTCTCTTGGGGGCATTGGGATCCTTAAACCTCTTCTTTTTCTGGCCATTGGGTGGGATGTAGTTCTTCATTTCTCTCTCGTAGCGGACCTTGTCTTGCTTTGCCATGTCCTCAAACGTTCCTTTTTCTTTAGGAGACATGGGCTGGATGTAGAGGTATAAATTCAGATTACACATCCACATGGCCACAGCAAGACTGTCCACA
>TU1476213
CCTTTATTTAAGACATTCCTGAATGTCAGCTGCATTTGTTATCAGAGTGGTATTCAAAGAACAATACAAAGACCGTGTGACAAACATATGAAAAAATATCCTTTAAAACAAATACAGAAAAAACATAATTCACTCGCTACCAACCCAGAAATCTGATTTGAGAGTTGCACACCTAAAGGAAAGTTATTACTTCCATTGTGATTTATAATCTGCCAAAGCAGTTACAGGCATGGGCAGGAAAAAAGGGCTACTACAAGAACAAAAACAAGACATGTAGTGTTACCTTTAACCGGTTAGGGAGCATTAAAACATTAAATATACACACAGCTTAATGTGTTCTCGTTGTGTCTGGGTCTGTTCGGAGATGTAAAGTGTGTACAATAGGGTTACATAGCGTTAAACAAGAATGTAGCCTCCAACAGCAGGGAGGCTACTCGTCATCATCCTCATCGTCATCCTCCTCATCATCTTCATCGTCGTCGTCATCAGCAGCTGCGGAGGAGGCAGTATCCACTCTACCATTGGTGCGGTATGATGCAATATCCTTGTCGTATTTCTCCTTCAGCGTGGCTGCCTTCTTCTCGTACGGCTTCTTCTCCTCAGCTGCAGAGCTGTTCCACATCACTCCCAGCTTCTTAGCAGTGTCTCCAATGGACAGGCCTGGGTGCTCGCTCTTTATCTTGGCCCGGAAGTCAGCACAGAAGATGAAGAACGCAGACGGCGGTCTCTTGGGGGCATTGGGATCCTTAAACCTCTTCTTTTTCTGGCCATTGGGTGGGATGTAGTTCTTCATTTCTCTCTCGTAGCGGACCTTGTCTTGCTTTGCCATGTCCTCAAACGTTCCTTTTTCTTTAGGAGACATGGGCTTCCATCGCTCTGAGCATTTCTTGGAGAACTCGGCGAAGTTGACGCTGGCTTCGGGCTGTTTCTTCTTGTGCTCCGCCCTGCAGGTCTGCACGAAGTAAGCATATGAGGACATCTTGCCTCTCGGCTTCCTAGGATCTTTCCCCATGGTGACTTGTGT

Function

NR:

description
PREDICTED: high mobility group-T protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1476212 False 1031 lncRNA 0.44 2 42041113 42042556
TU1476213 True 1024 lncRNA 0.46 4 42041113 42042826

Neighbor

gene id symbol gene type direction distance location
LOC118938919 NA coding upstream 17787 42019476 ~ 42023326 (+)
LOC110490081 LOC106580643 coding upstream 89281 41925174 ~ 41951832 (+)
iqcg iqcg coding upstream 204983 41810243 ~ 41836130 (+)
LOC110490072 LOC106612410 coding upstream 416073 41588463 ~ 41625040 (+)
LOC110490073 NA coding upstream 452993 41583335 ~ 41588120 (+)
LOC110490086 LOC106612440 coding downstream 111465 42154291 ~ 42255013 (+)
trnaa-ugc-68 NA coding downstream 279220 42322046 ~ 42322117 (+)
trnat-ugu-37 NA coding downstream 280718 42323544 ~ 42323615 (+)
trnaa-ugc-69 NA coding downstream 281640 42324466 ~ 42324537 (+)
trnaa-ugc-70 NA coding downstream 282562 42325388 ~ 42325459 (+)
G1293597 NA non-coding upstream 37526 42003378 ~ 42003587 (+)
G1293315 NA non-coding upstream 92745 41947314 ~ 41948368 (+)
G1293261 NA non-coding upstream 174388 41862216 ~ 41866725 (+)
G1293224 LOC106612432 non-coding upstream 230941 41805689 ~ 41810172 (+)
G1293174 NA non-coding upstream 291420 41740346 ~ 41749693 (+)
G1293637 NA non-coding downstream 26834 42069660 ~ 42069949 (+)
G1293769 NA non-coding downstream 158604 42201430 ~ 42201903 (+)
G1293798 NA non-coding downstream 214042 42256868 ~ 42257165 (+)
G1293974 NA non-coding downstream 261471 42304297 ~ 42304553 (+)
G1293979 NA non-coding downstream 278765 42321591 ~ 42323337 (+)
G1293295 NA other upstream 131502 41909034 ~ 41909611 (+)
G1293072 NA other upstream 452969 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 1910379 40089464 ~ 40132600 (+)
G1291464 NA other upstream 1973206 40067558 ~ 40067907 (+)
G1290614 NA other upstream 2914104 39126272 ~ 39127009 (+)
G1294319 NA other downstream 722027 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1554098 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1873352 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1986610 44029436 ~ 44029861 (+)
cblb cblb other downstream 2278677 44173352 ~ 44326246 (+)

Expression


Co-expression Network