G1294276


Basic Information

Item Value
gene id G1294276
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42557390 ~ 42568776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1476923
CATACATTTTGTATTACGTATACAGACAATTCAGAATTCGTTGCAGTATACATGTCCCCGTTTTCTCAACGATCACAGCATGCAACACCCTGTATATTTGGTTTAGATTAACAGGCTTGTGTCGCTGAATTTTTAGAACACACATGTCCGCTATATAAGTATATAAACAACAAATATGATACATGTTACAATTAAATGGTGTTTCCAACAAATAAAGTAAAATCTTAGACAAAGTTGTTTCTAGTTCTTCAGAATCATCCACAAGACAGGATACCAATTGTGTCCATTGTAGACTCTCGCACGCATGTCGTACATGATTCTTGATTTGTTCCATTTTCAGCACACGCTCTACATTAGCCCAGGAATTGTGGGTTGTGTAGAACGATACATTGTTCACTTTATTTTCAATAATTTGATGCATAACATTTGTAATTTCTCTCAAAAGAAAAAAGTTATTTATTCTCTCTAAAATTGTATACACACAGTTGCCCATTGCTTTACATCTAAATAACAAATTGTCACTCGGTCTCTTGGGGTTTATTGAGCCAGAAAGTCATCACATCAGCCACCACAGCTTCCCTGTATTTGTTGTCGTCCACCAGGGTGTGTCGGATTTCTTTGAGTTTCTTGTGCATGTAGATTGCCTCCTTCAGTTCATGTAGGAAAGCCTCGGTTACCCCGTAAACTCTCGGAATAGACGGCACAAGACCCATAGACTCCAGGGCTCTGACCAGCGATGGTATAAACCTGCAGGATCAAAGTCTTTTCACCAGCTCCTCAAAATGGTTGAAGAAGTAGTATCTTGGGGGGTCGTATAGGCACGGATGCCTGCGCTGGCTGGGTGATTGACCTCACAACCAATGCATTTTTCTCGTATATACTCTCCAATCACCACGTCTAAAAGGGTGGCTACAGAGGCCTTGATGGTGTCCACAAAAATAGTACTGACCACCCCATCAAACACATACTCAGGCTGTGTACATGTAGGGGGGTGTCGCAGGTCTTGCCAGGGGGGAGTCAGTACTAGGGGGGAGTAGAATGTTGGGCTGCGAGGCATAGAGTCCTTAGGGTCTGGCCCCCATAACGTTTCGGAGTCCTGGTATGTTGTATGAATGGTATATGCGGAAATGAAGAACTGGAGGCTTTAAGGGCACTCCTTTTATTGTTGAACCAGTCCTTTGGGTATCAGGGCGTGGTTAACGCAGCCACGTACTTAGTTTTCTTCGGTGGATGACCCTTCTGAGGATGTACCTTCTTGGTGCTCCTTTGAATCATAATCCTCAGGATTTTCATATATTATGCACTTCCTTACATGAACAATGCTCTGCCGCTGTTGGCTCTGTACAAAAAGAGCGTCCAACAACTCTAACATTTTCAATTCCATTAAATCCCAACTTTTAAAAGGAATAAGCATGCGCAACCTAAAATCCCCAGTCAGGCCACCATCAcgaatgttttggttgcgggtttCCTCATTGCTGATATAGAACTCCATGCAGCCATAATGGAAGTCCATTCTTTCTTTGTATTTACCCTGTGAAAAATTCTTCCTGGGGAGTCAGGGGCACCTTCCCAACGGGTCTCGTAGCCCGTGAACAACCTATACCCCTTGGTGATAAGTCTCAGTTCGGGACACACAACCTTGCGAAAAACTGTCCAGTCTTCAAGCCCGTAGTCCACTCCTAAAGTCTGGTCGGTatattcttctccttctctccttcttctcctatATAGGTTCACTCTACAGGCCAGGTACTTAAACTGATACCCCCATTGCTGTCCATTAGACATCATCACTTGATCTTTCAGCGCAGTTGCGGGCGGTATTTGTGTTCTATACACACTCAGAAACCGTTTTTTTGGCGCATCGTATATTGTGGCTTTATACTTGGCCCTTTCTCTATGTTTTAGCCACGGTCCTGCTTCCGTTGTTACAGTCATCACAGCTTTGCCACTGATCACAAAATCtatgtttatttttaaaatcTTGTTTGCTGTTCTGGGGCCGCATGTCTTGTTCTGGGCTTTATTTATAATGCGTCTGCCACACCCAATACCCCAGACATTCCTGTTTCATAGACAACAGCCCTAAGGTCAATAAAACAGGGGGtggggccccccccccccccccccagttcaaaGAGGTCCCTAGACATAAATCatcatgacaacttcaaaggaataGATACAATATATGCATAAATTAGCACACCCTCTAATGCGTGAGAACAGGAACAGGATGCCCATATATGGGCATAAGCACGTGATCAGTTCCCGCCTGAATGTCCTGACCGGATGCCCAAATATGGGCATGCACACATCATCCGGACATTGGGTCATATATCAAACGTTTGACGTGtgtctactttattctctctaCTGTAGAACCCAATTCCTACATTTTAATATATACATGTTTTTTTATcaaacaacactacactacattttatctctgggaccctaaggatgacaaatcagagcaagattattgaatGTGTCTGAGACATTGGACAGTGGGGCTGGACAAAGTTTTAAAGAATGTCTACTGGGCAGCCACCGGGACTCGTCTCACCACCTTCACTGTGGACCTCTTCAAGTCCTTTGAAGACATGATGGTGTTGGCCCCAGGATGCTCCCGTCAAGCCTTTGTGGGAATGTTTGATGGAAGAAAAAAGCACTTTGGCAGGAGTGGAAAGATATGTGGCGAAACATTCCAGAAGGCATTCCTCGAGTAGACAGGCGGTTTGAAATAGACA
>TU1476924
TTCAACCTGTCCCTTCCTGCTCTGATCTGATCCAGGTGTCTGAGACATTGGACAGTGGGGCTGGACAAAGTTTTAAAGAATGTCTACTGGGCAGCCACCGGGACTCGTCTCACCACCTTCACTGTGGACCTCTTCAAGTCCTTTGAAGACATGATGGTGTTGGCCCCAGGATGCTCCCGTCAAGCCTTTGTGGGAATGTTTGATGGAAGAAAAAAGCACTTTGGCAGGAGTGGAAAGATATGTGGCGAAACATTCCAGAAGGCATTCCTCGAGTAGACAGGCGGTTTGAAATAGACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613464

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1476923 False 2756 lncRNA 0.44 3 42557390 42568776
TU1476924 True 297 lncRNA 0.49 2 42568362 42568776

Neighbor

gene id symbol gene type direction distance location
tpst1l tpst1 coding upstream 11416 42528504 ~ 42545974 (+)
LOC110490091 crcp coding upstream 43753 42509769 ~ 42513637 (+)
LOC110490089 zpld1 coding upstream 113351 42398093 ~ 42444039 (+)
trnaa-ugc-120 NA coding upstream 183266 42374053 ~ 42374124 (+)
trnaa-ugc-119 NA coding upstream 184188 42373131 ~ 42373202 (+)
ncbp3 ncbp3 coding downstream 36531 42605307 ~ 42624228 (+)
alg8 alg8 coding downstream 127939 42696715 ~ 42725617 (+)
guca1d LOC106602844 coding downstream 168852 42737628 ~ 42759052 (+)
trnaa-cgc-2 NA coding downstream 312983 42881759 ~ 42881830 (+)
LOC118938889 kif12 coding downstream 565431 43134207 ~ 43156862 (+)
G1294052 NA non-coding upstream 107653 42449475 ~ 42449737 (+)
trnaa-ugc-118 NA non-coding upstream 173785 42371805 ~ 42383605 (+)
G1293979 NA non-coding upstream 234053 42321591 ~ 42323337 (+)
G1293974 NA non-coding upstream 252837 42304297 ~ 42304553 (+)
G1293798 NA non-coding upstream 300225 42256868 ~ 42257165 (+)
G1294336 NA non-coding downstream 76238 42645014 ~ 42645230 (+)
G1294325 NA non-coding downstream 114848 42683624 ~ 42684414 (+)
G1294362 NA non-coding downstream 165515 42734291 ~ 42734604 (+)
G1294322 NA non-coding downstream 200719 42769495 ~ 42770500 (+)
G1294476 NA non-coding downstream 378759 42947535 ~ 42950110 (+)
G1293295 NA other upstream 647779 41909034 ~ 41909611 (+)
G1293072 NA other upstream 969246 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 2426656 40089464 ~ 40132600 (+)
G1291464 NA other upstream 2489483 40067558 ~ 40067907 (+)
G1290614 NA other upstream 3430381 39126272 ~ 39127009 (+)
G1294319 NA other downstream 196077 42764853 ~ 42767937 (+)
G1295348 LOC106602853 other downstream 1028148 43596924 ~ 43597464 (+)
G1295730 NA other downstream 1347402 43916178 ~ 43916479 (+)
G1295845 NA other downstream 1460660 44029436 ~ 44029861 (+)
cblb cblb other downstream 1752727 44173352 ~ 44326246 (+)

Expression


Co-expression Network