G1294955 (vtn1)


Basic Information

Item Value
gene id G1294955
gene name vtn1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43169864 ~ 43171387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1477656
TCATGAATATTTTATTTAATCATGTCAACCTAAATAGACAGTGCAGACTGATGTATCAGGTTGACTATCTTTAGTCAATACAAACAATGTAATAATGACTACTATAGTATGTTTTTCATTGTGCGCTACCATTATGATTAGATCATCTATATTGAACTTATGTAACTTTGTAATAAAAGTCATCATCAGCTTGTATTGTCTATCGCTTTTCATTTCTTTTCTGCCATTGGCTCGCAGTGTCTTgtcgtgtgtagtgtgtgtgggggtgtagtCACTGTAGTCAGAGTCATATGTGAAGCCTCCTCCCatcCAGTCGTGGTCatctaaaaaaaaatcctcaaagTACGCTGAGCGACTCTGTCTGGCCCTGCCTCTCTGACCCCGCCTCCTGTCCTTCCTCCACCTATTGGCTCGTCTCCTGGGGgtgggggatggggagggagtgggTTTAGGGCTGATGTAAAGACGGCCCACCATGGCAGCGTCTATGGGGGACTTGATCCCCACCCAGTCTTTATTGATGAACCGTGGGCCCTTTTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1477656 True 542 lncRNA 0.45 3 43169864 43171387

Neighbor

gene id symbol gene type direction distance location
LOC118938889 kif12 coding upstream 13002 43134207 ~ 43156862 (+)
trnaa-cgc-2 NA coding upstream 288034 42881759 ~ 42881830 (+)
guca1d LOC106602844 coding upstream 410812 42737628 ~ 42759052 (+)
alg8 alg8 coding upstream 444247 42696715 ~ 42725617 (+)
ncbp3 ncbp3 coding upstream 545636 42605307 ~ 42624228 (+)
slc13a2 LOC106602849 coding downstream 59168 43230555 ~ 43300368 (+)
trnas-gcu-9 NA coding downstream 163002 43334389 ~ 43334470 (+)
trnas-gcu-10 NA coding downstream 163554 43334941 ~ 43335022 (+)
trnas-gcu-11 NA coding downstream 170132 43341519 ~ 43341600 (+)
trnas-gcu-12 NA coding downstream 170684 43342071 ~ 43342152 (+)
G1294953 NA non-coding upstream 19490 43150052 ~ 43150374 (+)
G1294570 NA non-coding upstream 56553 43110341 ~ 43113311 (+)
G1294576 NA non-coding upstream 71425 43098208 ~ 43098439 (+)
G1294564 NA non-coding upstream 82056 43087467 ~ 43087808 (+)
G1294476 NA non-coding upstream 219754 42947535 ~ 42950110 (+)
G1294992 NA non-coding downstream 54432 43225819 ~ 43232807 (+)
G1295023 NA non-coding downstream 104222 43275609 ~ 43277639 (+)
G1295025 NA non-coding downstream 108548 43279935 ~ 43319383 (+)
G1295176 NA non-coding downstream 157239 43328626 ~ 43328947 (+)
G1295178 NA non-coding downstream 159692 43331079 ~ 43331377 (+)
G1294319 NA other upstream 401927 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1260253 41909034 ~ 41909611 (+)
G1293072 NA other upstream 1581720 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3039130 40089464 ~ 40132600 (+)
G1291464 NA other upstream 3101957 40067558 ~ 40067907 (+)
G1295348 LOC106602853 other downstream 425537 43596924 ~ 43597464 (+)
G1295730 NA other downstream 744791 43916178 ~ 43916479 (+)
G1295845 NA other downstream 858049 44029436 ~ 44029861 (+)
cblb cblb other downstream 1150116 44173352 ~ 44326246 (+)
G1296266 LOC106602826 other downstream 1375792 44547179 ~ 44581048 (+)

Expression


Co-expression Network