G1295025


Basic Information

Item Value
gene id G1295025
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43279935 ~ 43319383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1477737
TGTACCTTTTTTCTAAATATTACAAATAATTGTTTATTATAATCTGGGATGACACCCGTATCGTTGACACCAGCCAGTGAGGATGATTTATGTCTGATCTGTTTTGGTAAACTCAAGAAAGTTGACCCAGATGGTACACGTTTTGGGGGCAAGAGCTAGCAACATTGAGTGGAGATTTTGAAGAGTGCACATTCACGGGTAGGTAATCAGAGTCTATAGTGCCTTCAACCTTAGGATTTTTTGGACCCCCAGCGATCTGTGAGTTATTAATGAACTGGATGCTCctgtgtggcttagttggttgAGCACAGTGCTTGCAAtggcagggttgtgggtttgagtcccacgggggaccagtatgagaAAATGTATGACCTCACTActataagtcactctggataagagagtctgctaaatgactcaaatgtacaaATGGATGCAGCTGAGAAGAAACTAAACACTAAATTGGTGAATTTAGTGTAAACTTGCCCATTTTAAAATGCTTGCATTTAACAAGCATTTGTTGTTTTGCCGCTGTAATTACAAACTGCAATTACCACCATGTCGTTATTAGAGTGTAACTAACTATGAGTTATTACAATTAACTACAATACTTACACTGTAATAAGGACCCCTTAAAATAAATTGTTACTGAACACTTTGATGAGAAAACAGAAATCACCTCCTTCTCCCACATCCTCATCTGGACCACtctgggagggagagaaggagatgatgACCGGTGTGGTGATGGAGTGGCAGCACCTGCAGCACTTCATCCATCACCACATACGACGTCCAGTATGTGGCTGTAGCTTCCCCTCCCTCCTTGCTGATTCCGGGGGGAGAGCTTTCAACTCCTGAAAAATATGGAAAAGAATAGTATACTATAATATGGAAAATCATGTGTACTGAGAGAAACTTGGACATCTATTCAAACAATTAATCTTTATTTAAGCTCGATTAATTATTGAAATAATGAATCTGGCCGACTGCTCACTCTGAAGTGTGTGTTGCCGAGAGCTTAACCTTACAGACATTGCAgagttaaaacttcttatggctggggggcagtattgagtagcttggatgaattaggtgcccagagtaaactgcctgctactcaggcccaaaagctaggatatgcatattattagtagatttggaaagacactcggaagtttctaaaactgtttgaatgatgtgtctgagtataacagaac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1477737 True 1223 lncRNA 0.41 2 43279935 43319383

Neighbor

gene id symbol gene type direction distance location
LOC118938889 kif12 coding upstream 123073 43134207 ~ 43156862 (+)
trnaa-cgc-2 NA coding upstream 398105 42881759 ~ 42881830 (+)
guca1d LOC106602844 coding upstream 520883 42737628 ~ 42759052 (+)
alg8 alg8 coding upstream 554318 42696715 ~ 42725617 (+)
ncbp3 ncbp3 coding upstream 655707 42605307 ~ 42624228 (+)
trnas-gcu-9 NA coding downstream 15006 43334389 ~ 43334470 (+)
trnas-gcu-10 NA coding downstream 15558 43334941 ~ 43335022 (+)
trnas-gcu-11 NA coding downstream 22136 43341519 ~ 43341600 (+)
trnas-gcu-12 NA coding downstream 22688 43342071 ~ 43342152 (+)
trnas-gcu-13 NA coding downstream 29269 43348652 ~ 43348733 (+)
G1295023 NA non-coding upstream 2296 43275609 ~ 43277639 (+)
G1294992 NA non-coding upstream 47128 43225819 ~ 43232807 (+)
G1294955 vtn1 non-coding upstream 108548 43169864 ~ 43171387 (+)
G1294953 NA non-coding upstream 129561 43150052 ~ 43150374 (+)
G1294570 NA non-coding upstream 166624 43110341 ~ 43113311 (+)
G1295176 NA non-coding downstream 9243 43328626 ~ 43328947 (+)
G1295178 NA non-coding downstream 11696 43331079 ~ 43331377 (+)
G1295185 NA non-coding downstream 27693 43347076 ~ 43353630 (+)
G1295208 NA non-coding downstream 107459 43426842 ~ 43457776 (+)
trnas-gcu-157 NA non-coding downstream 189718 43509101 ~ 43510533 (+)
G1294319 NA other upstream 511998 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1370324 41909034 ~ 41909611 (+)
G1293072 NA other upstream 1691791 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3149201 40089464 ~ 40132600 (+)
G1291464 NA other upstream 3212028 40067558 ~ 40067907 (+)
G1295348 LOC106602853 other downstream 277541 43596924 ~ 43597464 (+)
G1295730 NA other downstream 596795 43916178 ~ 43916479 (+)
G1295845 NA other downstream 710053 44029436 ~ 44029861 (+)
cblb cblb other downstream 1002120 44173352 ~ 44326246 (+)
G1296266 LOC106602826 other downstream 1227796 44547179 ~ 44581048 (+)

Expression


Co-expression Network