G1295316


Basic Information

Item Value
gene id G1295316
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43548792 ~ 43549416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478058
gcatgtCTGATCACTCTTCTCCTTGtataagctgaaagtttagagggacggccaggttttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttatatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctccctgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttacatctttatgtttgaagcctgaaatgtggcaaaaggtcgtaaagttcaagggggccgaatactttcacaaggcactgtacatacagc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478058 True 625 lncRNA 0.40 1 43548792 43549416

Neighbor

gene id symbol gene type direction distance location
LOC110490104 LOC106602850 coding upstream 14558 43530002 ~ 43534234 (+)
trnas-gcu-162 NA coding upstream 31772 43516939 ~ 43517020 (+)
trnas-gcu-161 NA coding upstream 34003 43514708 ~ 43514789 (+)
trnas-gcu-160 NA coding upstream 35460 43513251 ~ 43513332 (+)
trnas-gcu-159 NA coding upstream 36578 43512133 ~ 43512214 (+)
LOC110490107 lis1b coding downstream 91965 43641381 ~ 43692014 (+)
LOC110490730 NA coding downstream 146796 43696212 ~ 43697965 (+)
mntb LOC106602836 coding downstream 149039 43698455 ~ 43718346 (+)
mrps17 mrps17 coding downstream 448597 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 455997 44005413 ~ 44024583 (+)
G1295306 NA non-coding upstream 7197 43541273 ~ 43541595 (+)
G1295289 NA non-coding upstream 24733 43523818 ~ 43524059 (+)
trnas-gcu-157 NA non-coding upstream 38338 43509101 ~ 43510533 (+)
G1295208 NA non-coding upstream 91016 43426842 ~ 43457776 (+)
G1295185 NA non-coding upstream 195162 43347076 ~ 43353630 (+)
G1295346 NA non-coding downstream 34868 43584284 ~ 43584574 (+)
G1295329 NA non-coding downstream 37509 43586925 ~ 43588112 (+)
G1295331 LOC106602853 non-coding downstream 45683 43595099 ~ 43595445 (+)
G1295349 LOC106602853 non-coding downstream 48161 43597577 ~ 43598229 (+)
G1295365 LOC106584613 non-coding downstream 71499 43620915 ~ 43621192 (+)
G1294319 NA other upstream 780855 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1639181 41909034 ~ 41909611 (+)
G1293072 NA other upstream 1960648 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3418058 40089464 ~ 40132600 (+)
G1291464 NA other upstream 3480885 40067558 ~ 40067907 (+)
G1295348 LOC106602853 other downstream 47508 43596924 ~ 43597464 (+)
G1295730 NA other downstream 366762 43916178 ~ 43916479 (+)
G1295845 NA other downstream 480020 44029436 ~ 44029861 (+)
cblb cblb other downstream 772087 44173352 ~ 44326246 (+)
G1296266 LOC106602826 other downstream 997763 44547179 ~ 44581048 (+)

Expression


Co-expression Network