G1295365 (LOC106584613)


Basic Information

Item Value
gene id G1295365
gene name LOC106584613
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43620915 ~ 43621192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478111
GTCATCTACGAGCGTTATGTTTTCGGTCGTTGCAAACAGGAGGACGGGGAGTCCATTGACAGCTTTGTCACTAGGTTAAGGGAAAAGGCAGCTACATGTGACTATGGTGCTTTAAGAGATGAACTGATCAGAGATAAGATTGTGCTTGGCATAACTGATGAGGGCACCCGCAGACGTTTGCTGAGAGAACGTGACCTGACGCTGGTCTTGGCAGTGGAGACATGCCGTGCAGCAGAGCTTACTGATATACGGATAAGGTCCATGGAGCTAGAAAGGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584613

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478111 True 278 lncRNA 0.49 1 43620915 43621192

Neighbor

gene id symbol gene type direction distance location
LOC110490104 LOC106602850 coding upstream 86681 43530002 ~ 43534234 (+)
trnas-gcu-162 NA coding upstream 103895 43516939 ~ 43517020 (+)
trnas-gcu-161 NA coding upstream 106126 43514708 ~ 43514789 (+)
trnas-gcu-160 NA coding upstream 107583 43513251 ~ 43513332 (+)
trnas-gcu-159 NA coding upstream 108701 43512133 ~ 43512214 (+)
LOC110490107 lis1b coding downstream 20189 43641381 ~ 43692014 (+)
LOC110490730 NA coding downstream 75020 43696212 ~ 43697965 (+)
mntb LOC106602836 coding downstream 77263 43698455 ~ 43718346 (+)
mrps17 mrps17 coding downstream 376821 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 384221 44005413 ~ 44024583 (+)
G1295349 LOC106602853 non-coding upstream 22686 43597577 ~ 43598229 (+)
G1295331 LOC106602853 non-coding upstream 25470 43595099 ~ 43595445 (+)
G1295329 NA non-coding upstream 32803 43586925 ~ 43588112 (+)
G1295346 NA non-coding upstream 36341 43584284 ~ 43584574 (+)
G1295316 NA non-coding upstream 71499 43548792 ~ 43549416 (+)
G1295371 NA non-coding downstream 10865 43632057 ~ 43632307 (+)
G1295359 NA non-coding downstream 71139 43692331 ~ 43692788 (+)
G1295391 NA non-coding downstream 89843 43711035 ~ 43713182 (+)
G1295396 LOC106602834 non-coding downstream 108903 43730095 ~ 43730785 (+)
G1295348 LOC106602853 other upstream 23451 43596924 ~ 43597464 (+)
G1294319 NA other upstream 852978 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1711304 41909034 ~ 41909611 (+)
G1293072 NA other upstream 2032771 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3490181 40089464 ~ 40132600 (+)
G1295730 NA other downstream 294986 43916178 ~ 43916479 (+)
G1295845 NA other downstream 408244 44029436 ~ 44029861 (+)
cblb cblb other downstream 700311 44173352 ~ 44326246 (+)
G1296266 LOC106602826 other downstream 925987 44547179 ~ 44581048 (+)
G1296185 NA other downstream 1028509 44649701 ~ 44652079 (+)

Expression


Co-expression Network