G1295391


Basic Information

Item Value
gene id G1295391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43711035 ~ 43713182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478138
ctataggcaaatctgaccatggacgacttaccttgcttcataggagcctataggcaaatctgaccatggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcataggagcctgtaggcaaatctgaccagggacgacttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagcctgtaggcaaatctgaccagggacgacttaccttgcttcataggagcctgtaggcaaatctgaccagggaCGTCTTACCTTGCTGCATAGGAGCCTgtaggcaaatctgaccagggacgacttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccatggacgacttaccttgcttcatagcagagcagcctataggcaaatctgaccagggacgtcttaccttgcttcatagcagcctgtaggcaaatctgaccagggacgtcttaccttgcttcatagcagagcagcctataggcaaatctgaccagggaCGTCTTACCTTGTTTCATAGGAGCCTgtaggcaaatctgaccagggacgacttaccttgcttcatagcagcctgtaggcaaatctgaccagggaCGACTTACCTTGCTTCATAGGAGCCTGTAGAAAAATCTGACCAGGGACGTGTTACCTTGCTTCATAGGAGCCTGTAGGAAAATCTGACCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478138 True 959 lncRNA 0.50 3 43711035 43713182

Neighbor

gene id symbol gene type direction distance location
LOC110490730 NA coding upstream 13217 43696212 ~ 43697965 (+)
LOC110490107 lis1b coding upstream 19021 43641381 ~ 43692014 (+)
LOC110490104 LOC106602850 coding upstream 176801 43530002 ~ 43534234 (+)
trnas-gcu-162 NA coding upstream 194015 43516939 ~ 43517020 (+)
trnas-gcu-161 NA coding upstream 196246 43514708 ~ 43514789 (+)
mrps17 mrps17 coding downstream 284831 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 292231 44005413 ~ 44024583 (+)
cblb cblb coding downstream 460170 44173352 ~ 44326246 (+)
LOC110490121 LOC106602827 coding downstream 873103 44586285 ~ 44603799 (+)
LOC110490732 LOC106602993 coding downstream 933611 44646793 ~ 44648830 (+)
G1295359 NA non-coding upstream 18247 43692331 ~ 43692788 (+)
G1295371 NA non-coding upstream 78728 43632057 ~ 43632307 (+)
G1295365 LOC106584613 non-coding upstream 89843 43620915 ~ 43621192 (+)
G1295349 LOC106602853 non-coding upstream 112806 43597577 ~ 43598229 (+)
G1295396 LOC106602834 non-coding downstream 16913 43730095 ~ 43730785 (+)
G1295401 NA non-coding downstream 20460 43733642 ~ 43734363 (+)
G1295402 NA non-coding downstream 21429 43734611 ~ 43734957 (+)
G1295404 NA non-coding downstream 23085 43736267 ~ 43736786 (+)
G1295405 NA non-coding downstream 24269 43737451 ~ 43737759 (+)
G1295348 LOC106602853 other upstream 113571 43596924 ~ 43597464 (+)
G1294319 NA other upstream 943098 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1801424 41909034 ~ 41909611 (+)
G1293072 NA other upstream 2122891 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3580301 40089464 ~ 40132600 (+)
G1295730 NA other downstream 202996 43916178 ~ 43916479 (+)
G1295845 NA other downstream 316254 44029436 ~ 44029861 (+)
G1296266 LOC106602826 other downstream 833997 44547179 ~ 44581048 (+)
G1296185 NA other downstream 936519 44649701 ~ 44652079 (+)

Expression


Co-expression Network