G1295396 (LOC106602834)


Basic Information

Item Value
gene id G1295396
gene name LOC106602834
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43730095 ~ 43730785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478146
tgtgCCCCCAGTAGAGGGGCGTGGCCACTGAATCGTCATTCCATGAGGGACTATGATAGCAGCAAATCATCATGAGATAATCATAATTCCAGCCTAAATAACCCATGTacctctctgtgttgttgacagCGTCACCAAACCCTGGTGTATCTACGATGGAGAGTCTGAGTCTGACCCCCTTCTCCTCGATACCCACGGTGTGTTTGGTGATGAACACTGTTTGCACGATccgctCCTCTGCATTCAGCACCTTCCTGTTGTTGTAGAGGTCTGTAAGGTACAGACTGTTGACCAGAGTGGATTTACCCAGACCAGACTCTCCTGCTACCATGAGGGTGAAGGCAAAACCCTTTTTGA
>TU1478145
AGAGGCAAATCATTCCAAAAAGGACACAACTTGCTGTTATAGCAAAACAATAATAGTAGTTAATAGCAACGGACACATTGAGAAAGGAGTTTTACTGACAATATTTCTGTCTCACCCTCTGCATTCAGCACCTTCCTGTTGTTGTAGAGGTCTGTAAGGTACAGACTGTTGACCAGAGTGGATTTACCCAGACCAGACTCTCCTGCTACCATGAGGGTGAAGGCAAAACCCTTTTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478146 False 357 lncRNA 0.49 3 43730095 43730785
TU1478145 True 238 lncRNA 0.42 2 43730388 43730785

Neighbor

gene id symbol gene type direction distance location
mntb LOC106602836 coding upstream 11749 43698455 ~ 43718346 (+)
LOC110490730 NA coding upstream 32277 43696212 ~ 43697965 (+)
LOC110490107 lis1b coding upstream 38081 43641381 ~ 43692014 (+)
LOC110490104 LOC106602850 coding upstream 195861 43530002 ~ 43534234 (+)
trnas-gcu-162 NA coding upstream 213075 43516939 ~ 43517020 (+)
mrps17 mrps17 coding downstream 267228 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 274628 44005413 ~ 44024583 (+)
cblb cblb coding downstream 442567 44173352 ~ 44326246 (+)
LOC110490121 LOC106602827 coding downstream 855500 44586285 ~ 44603799 (+)
LOC110490732 LOC106602993 coding downstream 916008 44646793 ~ 44648830 (+)
G1295391 NA non-coding upstream 16913 43711035 ~ 43713182 (+)
G1295359 NA non-coding upstream 37307 43692331 ~ 43692788 (+)
G1295371 NA non-coding upstream 97788 43632057 ~ 43632307 (+)
G1295365 LOC106584613 non-coding upstream 108903 43620915 ~ 43621192 (+)
G1295401 NA non-coding downstream 2857 43733642 ~ 43734363 (+)
G1295402 NA non-coding downstream 3826 43734611 ~ 43734957 (+)
G1295404 NA non-coding downstream 5482 43736267 ~ 43736786 (+)
G1295405 NA non-coding downstream 6666 43737451 ~ 43737759 (+)
G1295415 NA non-coding downstream 20330 43751115 ~ 43751625 (+)
G1295348 LOC106602853 other upstream 132631 43596924 ~ 43597464 (+)
G1294319 NA other upstream 962158 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1820484 41909034 ~ 41909611 (+)
G1293072 NA other upstream 2141951 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3599361 40089464 ~ 40132600 (+)
G1295730 NA other downstream 185393 43916178 ~ 43916479 (+)
G1295845 NA other downstream 298651 44029436 ~ 44029861 (+)
G1296266 LOC106602826 other downstream 816394 44547179 ~ 44581048 (+)
G1296185 NA other downstream 918916 44649701 ~ 44652079 (+)

Expression


Co-expression Network