G1295401


Basic Information

Item Value
gene id G1295401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43733642 ~ 43734363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478151
TCACTCTGGGATCGATAGGTGGTAAATTTGCAAAGTCTGAGGTAAACACTGACCGAATTAGGTGAAACACGGGGTCCTGTGCTGACACAACATAAACAATGTAAACTGCTGTGTACCCTACTGCCGGTTGGATTCCACATGACACAACGTGCAATTTCACCAACTACCGACTGACCCAAAACAACAAGCAATTTGGAACACTTTAATTCAGAACAACAGACGTAAAAGTAGTAAGTGGACATCTGTATGTAAACTGCATTTTGAGGGGGTGCCAGGACACACGACCAGAATATGTCAACAATATTTCCCTGGTTCAAGGAATGGCCTGACATAATcaacacacacaacctgacctACCCGAATGCACAAATGCCCCTGAATGAACCCCAACTTGCCCTATTGACCGTAAGAGGTCTTCGGAAGAAACCAGCTGCGCCCAGACGAAGATAACCATCATCTGcttgctagctaagttagcttGACGCATGCTGTTGTTAATTAGCTTGCTAGTTAACAGATCTTCTGTAGCTAACCAGGTTGCTTACGGTGCTCTTCTGGCAGCCAACAATAATATTAAAACTAGCATAATGAAGAGGATGTTTCTGCTTTATTCAGCCCATACCTGCATGTGGATTGTGCCTGGCTTTATCTATGTAGCGGTCTTACAAGGCACAGCTTCATAGCTGGCTAAAGCCACAATCTGGTATTGGGCTATcctacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478151 True 722 lncRNA 0.44 1 43733642 43734363

Neighbor

gene id symbol gene type direction distance location
mntb LOC106602836 coding upstream 15296 43698455 ~ 43718346 (+)
LOC110490730 NA coding upstream 35824 43696212 ~ 43697965 (+)
LOC110490107 lis1b coding upstream 41628 43641381 ~ 43692014 (+)
LOC110490104 LOC106602850 coding upstream 199408 43530002 ~ 43534234 (+)
trnas-gcu-162 NA coding upstream 216622 43516939 ~ 43517020 (+)
mrps17 mrps17 coding downstream 263650 43998013 ~ 43999931 (+)
nipsnap2 nips2 coding downstream 271050 44005413 ~ 44024583 (+)
cblb cblb coding downstream 438989 44173352 ~ 44326246 (+)
LOC110490121 LOC106602827 coding downstream 851922 44586285 ~ 44603799 (+)
LOC110490732 LOC106602993 coding downstream 912430 44646793 ~ 44648830 (+)
G1295396 LOC106602834 non-coding upstream 2857 43730095 ~ 43730785 (+)
G1295391 NA non-coding upstream 20460 43711035 ~ 43713182 (+)
G1295359 NA non-coding upstream 40854 43692331 ~ 43692788 (+)
G1295371 NA non-coding upstream 101335 43632057 ~ 43632307 (+)
G1295402 NA non-coding downstream 248 43734611 ~ 43734957 (+)
G1295404 NA non-coding downstream 1904 43736267 ~ 43736786 (+)
G1295405 NA non-coding downstream 3088 43737451 ~ 43737759 (+)
G1295415 NA non-coding downstream 16752 43751115 ~ 43751625 (+)
G1295447 NA non-coding downstream 70860 43805223 ~ 43805857 (+)
G1295348 LOC106602853 other upstream 136178 43596924 ~ 43597464 (+)
G1294319 NA other upstream 965705 42764853 ~ 42767937 (+)
G1293295 NA other upstream 1824031 41909034 ~ 41909611 (+)
G1293072 NA other upstream 2145498 41583216 ~ 41589030 (+)
LOC110490048 il-1racp other upstream 3602908 40089464 ~ 40132600 (+)
G1295730 NA other downstream 181815 43916178 ~ 43916479 (+)
G1295845 NA other downstream 295073 44029436 ~ 44029861 (+)
G1296266 LOC106602826 other downstream 812816 44547179 ~ 44581048 (+)
G1296185 NA other downstream 915338 44649701 ~ 44652079 (+)

Expression


Co-expression Network