G1295887 (cfap54)


Basic Information

Item Value
gene id G1295887
gene name cfap54
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44094802 ~ 44095443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1478677
GAGGTCTGTAGCCAGCTCAAACAAAGGGGTGAGGACAGTGTTGAGCTGGTCCAATGTTAAAGGGATGGGGGGCTCCATGGATGTACCCCTGTCTACTAGTAGAGTGATGGTACAGCCCTGGTCCCATAGTGtccgacacacacactgcaacgtTGTCCAGTGGCCCCCACGATGGGCAAgTACCATGGCTCTGCGGAGGTGCAGGGCAGCCTTGTTGAGTGACTCCAGCAGCTGAGTGGAAGTGCGTCTGGTCGGGGAGGTGGTCATCACTGAGGGCTCACTATAGTCCGAGTCCACAGCCGGCTGGGTACGGGGAGAGTCCTGCTCACTGTCCTGCTCACTGCTCTCTGTCGTGCTGAAGTCCTCTCCactggtg

Function

symbol description
cfap54 Predicted to be involved in cilium assembly; cilium movement involved in cell motility; and spermatogenesis. Predicted to act upstream of or within cerebrospinal fluid circulation and mucociliary clearance. Predicted to be located in axoneme.

NR:

description
PREDICTED: cilia- and flagella-associated protein 54 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1478677 True 376 lncRNA 0.58 2 44094802 44095443

Neighbor

gene id symbol gene type direction distance location
nipsnap2 nips2 coding upstream 70219 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 94871 43998013 ~ 43999931 (+)
mntb LOC106602836 coding upstream 376456 43698455 ~ 43718346 (+)
LOC110490730 NA coding upstream 396984 43696212 ~ 43697965 (+)
LOC110490107 lis1b coding upstream 402788 43641381 ~ 43692014 (+)
cblb cblb coding downstream 77909 44173352 ~ 44326246 (+)
LOC110490121 LOC106602827 coding downstream 490842 44586285 ~ 44603799 (+)
LOC110490732 LOC106602993 coding downstream 551350 44646793 ~ 44648830 (+)
cldn2 cldn7 coding downstream 623857 44719300 ~ 44721744 (+)
LOC110490127 LOC106602822 coding downstream 640317 44735760 ~ 44848514 (+)
G1295849 NA non-coding upstream 57129 44037390 ~ 44037673 (+)
G1295843 NA non-coding upstream 66924 44027587 ~ 44027878 (+)
G1295789 NA non-coding upstream 132505 43961985 ~ 43962297 (+)
G1295788 NA non-coding upstream 133905 43960438 ~ 43960897 (+)
G1295787 NA non-coding upstream 135196 43959399 ~ 43959606 (+)
G1296030 NA non-coding downstream 57252 44152695 ~ 44153020 (+)
G1296051 NA non-coding downstream 72645 44168088 ~ 44168835 (+)
G1296050 NA non-coding downstream 295039 44390482 ~ 44391077 (+)
G1296182 NA non-coding downstream 302428 44397871 ~ 44613813 (+)
G1296227 NA non-coding downstream 339824 44435267 ~ 44436862 (+)
G1295845 NA other upstream 64941 44029436 ~ 44029861 (+)
G1295730 NA other upstream 178323 43916178 ~ 43916479 (+)
G1295348 LOC106602853 other upstream 497338 43596924 ~ 43597464 (+)
G1294319 NA other upstream 1326865 42764853 ~ 42767937 (+)
G1293295 NA other upstream 2185191 41909034 ~ 41909611 (+)
G1296266 LOC106602826 other downstream 451736 44547179 ~ 44581048 (+)
G1296185 NA other downstream 554258 44649701 ~ 44652079 (+)
G1298452 NA other downstream 2158896 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 2218809 46293582 ~ 46316075 (+)

Expression


Co-expression Network