G1296282


Basic Information

Item Value
gene id G1296282
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44567445 ~ 44573979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479117
ccattcacccagttcaatgtaacagtggtgggtttaggttactgtcgttcatatttcattcacccagttcaatgtagcagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgatgggtttaagttactgtcattcatattccattcacccagttcaatgtaacactgatgggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcgcccagttcaatgt
>TU1479118
ccattcacccagttcaatgtaacagtggtgggtttaggttactgtcgttcatatttcattcacccagttcaatgtagcagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgatgggtttaggttactatcattcatattccattcacccatttcaatgtaacagtgataggtttaggttactgtcattcatattccattcacccagtccaatgtaacagtgataggtttaggttactgtcattcatattccattcacccatttcaatgtaacagtgataggtttaggttactgtcattcatattccattcatccagttcaatgtaacagtgatggg
>TU1479121
ttcatattcacccagttcaatgtaacagtgatgggtttaggttactgtcattcatattcacccagttcaatgtaacagtgatgggtttaagttactgtcattcatattccattcacccagttcaatgtaacactgatgggtttaggttactgtcattcatattccatttacccagttcaatgtaaaagtgatgggtttaggttactgtcattaattttcacccagttcaatgtaacagtgatgggtttaggttactgtcattcatagtcacccagttcaatgtcaCAGTGATGGGtataggttactgtcattcatattccattcacccatttcaatgtaacagtgataggttt
>TU1479119
cccagctcaatgtaacagtgatgggtttaggttactgtcattcatattccattcatccagttcaatgtaacagtgatgggtttaggttactgtcattcatattcacccagttcaatgtaacagtgatggatttaggttactgtcattcatattcacccagttcaatgtaacagtgatgggtttaagttactgtcattcatattccattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcgcccagttcaatgt
>TU1479120
gttcaatgtaacagtgatgggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattcacccagttcaatgtaacagtgataggtttaggttactgtcattcatattccattcgcccagttcaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479117 False 340 lncRNA 0.38 4 44567445 44573979
TU1479118 False 357 lncRNA 0.38 3 44567445 44568591
TU1479121 False 353 lncRNA 0.37 3 44568662 44570449
TU1479119 False 328 lncRNA 0.38 2 44569992 44573979
TU1479120 True 219 lncRNA 0.37 2 44572221 44573979

Neighbor

gene id symbol gene type direction distance location
cblb cblb coding upstream 241199 44173352 ~ 44326246 (+)
nipsnap2 nips2 coding upstream 542862 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 567514 43998013 ~ 43999931 (+)
mntb LOC106602836 coding upstream 849099 43698455 ~ 43718346 (+)
LOC110490730 NA coding upstream 869627 43696212 ~ 43697965 (+)
LOC110490121 LOC106602827 coding downstream 12306 44586285 ~ 44603799 (+)
LOC110490732 LOC106602993 coding downstream 72814 44646793 ~ 44648830 (+)
cldn2 cldn7 coding downstream 145321 44719300 ~ 44721744 (+)
LOC110490127 LOC106602822 coding downstream 161781 44735760 ~ 44848514 (+)
LOC110490129 LOC106602819 coding downstream 364006 44937985 ~ 44993895 (+)
G1296228 NA non-coding upstream 111354 44444069 ~ 44456091 (+)
G1296227 NA non-coding upstream 130583 44435267 ~ 44436862 (+)
G1296050 NA non-coding upstream 176368 44390482 ~ 44391077 (+)
G1296051 NA non-coding upstream 398610 44168088 ~ 44168835 (+)
G1296030 NA non-coding upstream 414425 44152695 ~ 44153020 (+)
G1296303 NA non-coding downstream 49642 44623621 ~ 44624085 (+)
G1296304 NA non-coding downstream 50590 44624569 ~ 44624869 (+)
G1296307 NA non-coding downstream 55874 44629853 ~ 44630112 (+)
G1296186 NA non-coding downstream 78268 44652247 ~ 44654702 (+)
G1296189 prrg3 non-coding downstream 80936 44654915 ~ 44656628 (+)
G1295845 NA other upstream 537584 44029436 ~ 44029861 (+)
G1295730 NA other upstream 650966 43916178 ~ 43916479 (+)
G1295348 LOC106602853 other upstream 969981 43596924 ~ 43597464 (+)
G1294319 NA other upstream 1799508 42764853 ~ 42767937 (+)
G1296185 NA other downstream 75722 44649701 ~ 44652079 (+)
G1298452 NA other downstream 1680360 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1740273 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2995851 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 3372389 47946368 ~ 47947892 (+)

Expression


Co-expression Network