G1296185


Basic Information

Item Value
gene id G1296185
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44649701 ~ 44652079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479009
ATCTGACGTAGATACATTAGCCTACTTACCCAGGGGGCAACATTTGGCATTGTAAACTGGTTTTCTGCTTATAAAGATAACCTGATTACAACAAGGTAATGGAGACATCTGGGAAAGAGCTCATATTTTGGCTGTTAGACGTTTTCTGGTCGCTAAAAATATGTCTAAAAAAACATTCTTCCCTGACCTCACTTTGCAATTGCATGacatttacactgagtgtacaaaactttaggaacaactgctctttccatgacagactgaccaggtgaataaaggtgaacgctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtagataaagaggaggagacgggttaaagaaggattttaaaccttgagacagttgagacatggattgtatgtgtgtgtcattcagagggtgaatggacaagactaAATATTCACGTCCCTTATAACGGGGTATGACAGTAGGTGCGAGGCACAAAGGTTTCGGTGTGTGAAGAACTGCTATGCTgcagggtttttcatgctcaacagctTCCTGTGTGTaaccaaccaacttgacacaacatgttggagtcaacatgggtcagcatccctgtggaacgctttcgacaccttgcagagtccacgcccgacgaattgaggttgttctgagggcaaaggggagtgcaactcaatattaggaaggtgttcctaatgttttgtacactcgttGTATATTACACGTTTCACCCCAATTGAAACATGAAAAGACAGTTGAAGATATGTAATATTgtttacattgtaatattgtatacattgttgtcAACTTAACTATACCAAAATATGACAGTAGCTGACTGAATGTATGTTTGTTGCACCCCCCACCCCCTTTATAATACATAGAAAGTGATAGGCAGCAGTACAACCACATGGTTTGTGTTTGAAATTGGGTTAACAGCAACCTATTTTAACTCTATTGTATTCCATTAGGACCACCACCAATTCCACTGGGTCTGTCATAAGATGAGAGACACCCAGCCCCCTTCACATCACCCTCTCCTCCGACTCTCACACTGACCCACATGCAGGCCTGCGtccccaaatggccccctattccctacatggtccACTATTTATTGCCagatccctatgggtcctggtccaaagaagtgcaccatatagggaatagggcgacATTTGAGACCCAGAAAGCCCAGTATATCCACAACCAGACAGAACCAGGAGGAAGCATAGACCACAGTTGCTCTGGTCCAGGGGGTTACATGCGCCAAGCCTTGTTGAAGAAGGCCACATGtaatgccctggaccagagcaTAGGGCCAGTGACCCAGAGACAGACTGTATGGTACTTTGGTCAAAGACACGTGAGTATTAATAAAGCATTTGTCAGGCTGAACCCATTTAATGGACATCCAGTAACAAGAGAACGAGTATTTGGACATTTCTAACATTTCAGTGGTTTCTTCATGATAACTGGGTGAAATCAACTTTAACAGAGTGGGAGGCCAGGCTGTGGCTTATGTAATTGTATCTGAACTAACTGAATGTTGATGAGGCCTTGTCCAAGGTTCATTAGTCTAGGAGACCTATCTAAGCTACTCTCACTTGTAACCCTCATTTATGCACCGTAGGTAGAAACAGCTGTTATacactgatacagggtcagatgTTTTTCATCCCGCTACTGGTAAAGGTTAGAATTGCAGTTTTCTGATCCTATACCTGTTGTTGACTGATTTATGTAACAGTGGAGAGCAGCAAGCAGTGTTCTTCGTAATGAACTCCCTGTAGCATtggcctgatcccagatctgtttgtgctcttgccaactccattgctgtCATTTTGAAGTCAATGTTAGGCATGACAATGAGTGACAGGAGTTGGcaagatagcacaaacagatcagCATTCAGGCTAATGTAGCACCACTGTAACCCAATCATATAAGTCCATCTCATTGTGCTCACAGTTCTTTCTTGAGGCGTGATCATGAATAGAGCCAAGGGTTTTTCTAAACAGGTTCAACTTCTGGCCCCTATTTGTGAGGCTTCAAGGTCCGTCTTTCTAAACATTGAACAGCATCACAAGCACAGTCACTTCTAGACTAGTGATATAGGCTtcgtcccagatggcaccctattccctatatagtggactacttttgaccagggcacataggcctctggtcaaaagaagtgcacttcatagggaacaGAGTGCCATTTGGCATGTAGACATAGTGTTGAACCCAAGTCATTGACAAAAATGATCAGATATTCATGCACCCATTAAAAACCATTAGAAAACATCAACCGTAGTGTGCCATATAtatatctacagtgcattcggaaagtattcagaccccttga

Function

NR:

description
tapasin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479009 True 2379 TUCP 0.43 1 44649701 44652079

Neighbor

gene id symbol gene type direction distance location
LOC110490732 LOC106602993 coding upstream 871 44646793 ~ 44648830 (+)
LOC110490121 LOC106602827 coding upstream 45902 44586285 ~ 44603799 (+)
cblb cblb coding upstream 323455 44173352 ~ 44326246 (+)
nipsnap2 nips2 coding upstream 625118 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 649770 43998013 ~ 43999931 (+)
cldn2 cldn7 coding downstream 67221 44719300 ~ 44721744 (+)
LOC110490127 LOC106602822 coding downstream 83681 44735760 ~ 44848514 (+)
LOC110490129 LOC106602819 coding downstream 285906 44937985 ~ 44993895 (+)
LOC110490132 LOC106602816 coding downstream 438066 45090145 ~ 45151980 (+)
LOC110490134 LOC106602815 coding downstream 505990 45158069 ~ 45174534 (+)
G1296307 NA non-coding upstream 19589 44629853 ~ 44630112 (+)
G1296304 NA non-coding upstream 24832 44624569 ~ 44624869 (+)
G1296303 NA non-coding upstream 25616 44623621 ~ 44624085 (+)
G1296182 NA non-coding upstream 35888 44397871 ~ 44613813 (+)
G1296283 NA non-coding upstream 74806 44569481 ~ 44574895 (+)
G1296186 NA non-coding downstream 168 44652247 ~ 44654702 (+)
G1296189 prrg3 non-coding downstream 2836 44654915 ~ 44656628 (+)
G1296322 NA non-coding downstream 8398 44660477 ~ 44660710 (+)
G1296324 prrg3 non-coding downstream 10753 44662832 ~ 44663251 (+)
G1296331 NA non-coding downstream 18606 44670685 ~ 44671027 (+)
G1296266 LOC106602826 other upstream 68653 44547179 ~ 44581048 (+)
G1295845 NA other upstream 619840 44029436 ~ 44029861 (+)
G1295730 NA other upstream 733222 43916178 ~ 43916479 (+)
G1295348 LOC106602853 other upstream 1052237 43596924 ~ 43597464 (+)
G1298452 NA other downstream 1602260 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1662173 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2917751 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 3294289 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3707749 48359799 ~ 48360553 (+)

Expression


Co-expression Network