G1296186


Basic Information

Item Value
gene id G1296186
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44652247 ~ 44654702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479010
agaccttttactcagtactttgttgaagcccctttggtCGATTACAACCTCaattattcttgggtatgacgctacaagcttggcacacctgtaattggggagtttctcccattcttctctgcagatcctctcaatctctgtcaggttggatggggagcgttgctgcacagctattttcaggtctctccagaaatgtttgatcaggttcaagtccgagctctgacttggccactcaaggacattcagagacttgtcccgaagccactcctacgcaGGCTTTGTGCTTGGGGTCGTTATCTTGTTggtaggtgaaccttcaccccagtctgaggtcctgagcactctggagcaggttttcatcaaggatatctctgtgctttgctccgttcatctttccctcgatcctgactcgtctctcagtccctgctgctgaaaaacatccccacagcatgataatgccaccacgataatgccaccaccatacttcaccgtagggatggtgccaggtttcctttagatgtgacgcttggcatttaggccaaataatctagtttctcatggtctgagactctttaggtggcttttggcaagcTCCAgatgtgctgtcatgtgccttttactgaggcgttgcttccgtctggcaactctaccataaaggcctgattgggggagtgctgcagagatggttgtccttctagaaggttctcccatctccacagaggaactctagagctctgtcagaatgaccatcttgttattggtcacctcactgaccaaggcccttcgcccccgattgctcagtttggctgggtggccagctctaggaagagtcttggtggttccaaaagtcttctatttaagaatgatggaggccactgtgttcttggggaccttcaatgctacagacatgttttggtacgccaaacccagatctgtgcctcgacataatcctgtctccgatctctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggaccttcatatagacaggtgtgggcctttccaaatcatgtccaatcaattgaatttaccacaggtggattccaatcaagttgtagaaacatctcaaggatgatcagtagaaacaggatgcacctgagctctatttcgattctcattgcaaagggtctgaatactcatgtaaataaggtatgttttttggggggcggggttatacatttgctaaatattctaaaaacatgtcattatggtttattgtgtgtagacctCTGAGGGGAAAacagtatttaatcaattttagaataaagctgtaacataacaaaatgtggaaaaagtcaaggggtctgaacactttccgaacgcactgtatatttacatgtacatgcATGAATATATAGATATAGTAAAGAACATAAACAATTGTTTTTGTGGAGTATTTCAATCTTTAGTGAAGTGAATTTTTAAGGAGAGTTTGGGCACAAATACaggatctcacacacacatacacgcacacacactctcgcacATTGTTCATTCCATGAATATGAATCAGCACAAACTGTAGAATAGATGTCAGTATAAAGAGCCTTGAGACCCCGGGGACACTAGGAACTAGTcagcagacagaaacagacaacgCTCGCATCATcagaagcagacagacagtgcTCACATCATCAGAAGCAGCCAGCATCTAGCTCCTCTAGAAAGGGAAGGACCATTACAGTAGCCCTGtgtccatccctccttcccttccctgtAGAAGCCCTATTGTTTTGTCATCCCTCCTTCCTTGGAAAACTGCAGAGCAGACTAAGCCCAGGCCAGACGCTTACATTGCTAACCTTGAGGAGAAGGCCCCAGACAGGCCAGAGGGCATCTCCcgctccctatctctctctctctctctctgcccttggtcgctccttttctctctcccctgtgtAAAAAACAGGTACTCCAGGTATTGCtgtacaagtcagagttatcttGTGATCCCATTTGGTCCAGCCATTGGCAGTGGTTAGTATATAACATAGAGACTGTTACTGCTGGCAACCTGAGCTGATTCTGAAACACTACTTCTGTTGCATGTCCTGGTTGGTGGATATCTGGTTCAACATGGTTTGAACACCAACAAAACGAGACACAAGTGAAAAAGCAGTCAAAAGGCAAACAACAAAACAAGAAGAGACTAAAGAAAAGAAGAGCATTTGTACCATTCAGCAGTCATGATGGTGATATACCCGACCATGGCTCACTAGTCTAGAGATTTCTTACGCATCTATTCAAACAAGATTTTAAAAAGTAGCAATTGTAAACAGTTATAGCACAGCAGTACTGAAACCAGCATTGTAAAGTTCACTTTGCAGCTTTGAGAGGGATAGGCTGAGGGTTGACTGGAATGTTGTCAGAGCTACTGATTGTGCTtcctctgtcttt

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479010 True 2456 lncRNA 0.45 1 44652247 44654702

Neighbor

gene id symbol gene type direction distance location
LOC110490732 LOC106602993 coding upstream 3417 44646793 ~ 44648830 (+)
LOC110490121 LOC106602827 coding upstream 48448 44586285 ~ 44603799 (+)
cblb cblb coding upstream 326001 44173352 ~ 44326246 (+)
nipsnap2 nips2 coding upstream 627664 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 652316 43998013 ~ 43999931 (+)
cldn2 cldn7 coding downstream 64598 44719300 ~ 44721744 (+)
LOC110490127 LOC106602822 coding downstream 81058 44735760 ~ 44848514 (+)
LOC110490129 LOC106602819 coding downstream 283283 44937985 ~ 44993895 (+)
LOC110490132 LOC106602816 coding downstream 435443 45090145 ~ 45151980 (+)
LOC110490134 LOC106602815 coding downstream 503367 45158069 ~ 45174534 (+)
G1296307 NA non-coding upstream 22135 44629853 ~ 44630112 (+)
G1296304 NA non-coding upstream 27378 44624569 ~ 44624869 (+)
G1296303 NA non-coding upstream 28162 44623621 ~ 44624085 (+)
G1296283 NA non-coding upstream 77352 44569481 ~ 44574895 (+)
G1296282 NA non-coding upstream 78268 44567445 ~ 44573979 (+)
G1296189 prrg3 non-coding downstream 213 44654915 ~ 44656628 (+)
G1296322 NA non-coding downstream 5775 44660477 ~ 44660710 (+)
G1296324 prrg3 non-coding downstream 8130 44662832 ~ 44663251 (+)
G1296331 NA non-coding downstream 15983 44670685 ~ 44671027 (+)
G1296334 NA non-coding downstream 21048 44675750 ~ 44676043 (+)
G1296185 NA other upstream 168 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 71199 44547179 ~ 44581048 (+)
G1295845 NA other upstream 622386 44029436 ~ 44029861 (+)
G1295730 NA other upstream 735768 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1599637 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1659550 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2915128 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 3291666 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3705126 48359799 ~ 48360553 (+)

Expression


Co-expression Network