G1296189 (prrg3)


Basic Information

Item Value
gene id G1296189
gene name prrg3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44654915 ~ 44656628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479013
TAATTATCAGGTCATTCAATTATTTTCGAATTAGCCAAAAACTCAAATACCTGATTGACATTTTGAGATAGTACGCGTGTTCTTCCAACCATACACTTGGAGTGCATCCGTTTCCTCTTAATTCAAGGCCCTTCCATGACCAGAGGATATATGTGGAGAAAGACGGCCTTGGCGTTGGATTCAGACAAAGAGGAGAAACACTGAAGATCCCAATTCATCCGCTGTGTCTGGCTGCATCCTCTTCATAATAAGATAGTCCTATAGTCCCATAGTCCACAAGCACTggctactgtttctgtttgttaaaCCATACTACTTTCAATAAATGAAAGAATATACCTTTTCTTTTCATTTTGTGTGTTCAGAAAGCAGTACACGTAATCAGCAGTGGCACATTTGGCAAATCAACTCTCCTTTATCATGAGTCACGGCACAACTCTGGAGAGGAAGAAGTACTACTGAGGGCTTGGAAACTTCCTCACTACCTTCATCCACACAGTAGTCTCTTCCTCTCAGGGGATGGAGGGTGACTTGGCAATGTTCCATTCTTCTCACAACCACGTCCcaaatggccctggtcaaaagtagtgagtacactatgtagggaatagggcaccatttgggatgGCTGACACATTTAAAGGTGCCTCGGGGTGTCCGGGAAAGGTGTCGTTTCTTCAGTGTTTAGGGGGGGAAGGCAGTGTAGACGCAGCGATTGTATTTCTCCAAGTGACTAGCTACAGCTGGTGTGATGAGAGAAAGGTGgaaaagtatacagtataaaTATACAGCTATTATGGATATAGCGCTTCACTGCAGAGTCATACGCACTAGTAAACAATGACCACCACATTCAGAGTACAGTGAGAAACACTGATGCATAACAACAATGCAAAATCAAAACAGACCGCCAAACCCCAGGCATTGGCAAGATAGATAACTCAAGAAGAAAACACAGTGTAGCACAGATCATCGTCATTCCAAACCTTGTACAGTAGTCAGTCAGCGATAGATACAACAAGTGCTTCAAGATATTAGATACCACAGTGCATTCTTTCCCACGGATAGCTAGCAGTTTGCCAGCCCCTCAGACCAGAGACAAGgacaatggagggagggatggatctGACAGTATGGCCCCCGGCccagcctccctccatccctctctccctccctctgcttacTTCTCCTTGACAATCTCCTCATATTTGGGCGGAGGGTCGCTGTACGGCGCCGACACCTCGTCGCTGCTGCTCTCCAGGTGTCCTGTCACCTCCTCgtaggaaggaggaggtgtggcACCGGAGAGACGCGACGCTACTGACACAGACGGATCCTGGACGTACAGGGCTGAGCGAGTGTTCTGAGGGTGGGAGTGAGGTTCTTGGGGAACGTTTGCGGCGCAAACCAGCGaccctcctccacttcctcctacTACTCTCTCCACCCCACTCACCACCACCGTGGGCCTGGATAAGGGGGTCTCGGAGTGGGATGGCGTGTCCCGGTGGACCAGGATGCGCGGCAGGCTGCGGGTGTTGCGGTTGTTCATGTAGCGGTTCTGGGTGTAGGCTGGCCGCCGCCGTGTGGCCTTCTGCAGCTGGCACCTCCAGATGAGGAAGAGggcgatgaggaggaggagagccacGCCCAGCAGGGGAACCACCATGTAGAGGTGGCCCTCTGAACGGCCGTCCCTGGTCTGCTCGTGGCT

Function

symbol description
prrg3 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
transmembrane gamma-carboxyglutamic acid protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479013 True 1714 lncRNA 0.51 1 44654915 44656628

Neighbor

gene id symbol gene type direction distance location
LOC110490732 LOC106602993 coding upstream 6085 44646793 ~ 44648830 (+)
LOC110490121 LOC106602827 coding upstream 51116 44586285 ~ 44603799 (+)
cblb cblb coding upstream 328669 44173352 ~ 44326246 (+)
nipsnap2 nips2 coding upstream 630332 44005413 ~ 44024583 (+)
mrps17 mrps17 coding upstream 654984 43998013 ~ 43999931 (+)
cldn2 cldn7 coding downstream 62672 44719300 ~ 44721744 (+)
LOC110490127 LOC106602822 coding downstream 79132 44735760 ~ 44848514 (+)
LOC110490129 LOC106602819 coding downstream 281357 44937985 ~ 44993895 (+)
LOC110490132 LOC106602816 coding downstream 433517 45090145 ~ 45151980 (+)
LOC110490134 LOC106602815 coding downstream 501441 45158069 ~ 45174534 (+)
G1296186 NA non-coding upstream 213 44652247 ~ 44654702 (+)
G1296307 NA non-coding upstream 24803 44629853 ~ 44630112 (+)
G1296304 NA non-coding upstream 30046 44624569 ~ 44624869 (+)
G1296303 NA non-coding upstream 30830 44623621 ~ 44624085 (+)
G1296283 NA non-coding upstream 80020 44569481 ~ 44574895 (+)
G1296322 NA non-coding downstream 3849 44660477 ~ 44660710 (+)
G1296324 prrg3 non-coding downstream 6204 44662832 ~ 44663251 (+)
G1296331 NA non-coding downstream 14057 44670685 ~ 44671027 (+)
G1296334 NA non-coding downstream 19122 44675750 ~ 44676043 (+)
G1296410 NA non-coding downstream 204427 44861055 ~ 44861335 (+)
G1296185 NA other upstream 2836 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 73867 44547179 ~ 44581048 (+)
G1295845 NA other upstream 625054 44029436 ~ 44029861 (+)
G1295730 NA other upstream 738436 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1597711 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1657624 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2913202 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 3289740 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3703200 48359799 ~ 48360553 (+)

Expression


Co-expression Network