G1296430


Basic Information

Item Value
gene id G1296430
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44937205 ~ 45000672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479286
tcaaagcagggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctGCCagcatactgactcatctctagccactttaataataaaaaaaatggatgtaaatgtatcactagtcactttaaaaaaaatgccaCTTTATAggttttcataccctacattactcatctcatatgtatatactgtatcttggccatcactcatccatatatttatatgtacatattcttcttcattcctttacacttgtgtgtgaaattttagatgacttgttagatattactgcatggtcggaactagaagccatgtgtatgtgaccaataaaatttgatttgaaaacagaAGGGCAGATGGTTGATTGCACGGAATGTGACACCTGACCACAATAAAGGTCAACTGTCAAAGGACATTAGAACATACAACAAATAACTAGTAGGGGAGAGAACATGGGTgactctgaaatggcaccctattttcccTTGCATGCCATTTCAGATGGAGGCCATTTGTGAGTGCAGCACACACAACTCTGTACATACCAGGTTATTAACAGGTAGAGAGAATTTAGTCACAATGAACACAAAATGATGCATTCAAAGATCCCAGATACAAGGCTGATGTCACTATACTTCCTCAAACTGTCCTTCCTCAGAATTGTCCCAAACAGTCTCAGCAACCCAGAACCAAATCTCAACATCAAACAAAAACCTTCAACAAAGTAACTTGGTCTCTCCCCACATCTTAGTCATTTGGTAAAATACCACCATGCACATACGGTTAGTTCCAAATGAGATCCTGGACAGATAAAGACTACAGAACATATTATTTAAAAAGGCCATAAATATAGTAAAAGTAAAACAGACTTTACATTCAGTAAATCAACAGTCAGAACCATGTAGTTGATCCGCTTGGCTTGTGATGCATTGTAACGTTGAGGCTTGAAGAATTACGTTTTTCTTCTGCAGTCTGTCTTTGAGAcaatgggagaatctcaattgcatactacTTGCATCCTCTCTCGCCTCCTTCAAGAAACCCAAagttctctgaccttctcctccaatgggttttgagaaagaGGCGAGGACATGAGAAGTATGCAGTGGAGATTCTCCCATAGAAGAGCCCATTCTCACCCTTTTCACATTATCGTGCCAACCCAAACCGTACCGGCTCAGATTTTGGTTTCACATTTTCCTTTCTAGCGTGGTTTCAGCCAGTACAGTACAGCTTGGATTGattcagtagtgtgaaaaggacCTCTCTCTCAGGGAGTAGTATGTTTCTGTCAGTGTTATAAATGTTCTATGAGTTGGTTTAGAAACCCAGAGGGTGAGGAGCGACGATGCCTCCATTCTCCACTACGGCAGCAGATATGGCCTTCATGTTCTTAAAGACCTGGGTGGTGGAACTAGACTTCAGGTCCTTGACGTTCTTCATGATCCTGTCATAGgcctggtggtggagggaggagaggggggcagagatgagacttgtgtatgtacagtgtgcacacacacaatataGTGTCAAGAAAAAATGTGTGAACCCTTTGGGAATACCTGATTTCCGCATACATTTGTCATAgtggcggcaagtagcctagtggttagagcgtaggactAGCAAACGAAAGGTTGTTATTTAGCAAAAAGTTAACAAATGTtatttttggacagcagtggcttcttctgtggtgtcctcccatgaacactatTCTTGTTtcgtgttttacgtatcgtagactcgtcaagagatgttagcatgttccagagatttctgtaagtctttagctgacactaggattcttcttaacctcattgagcattctgcgttgtgctcttgcagtcatctttgcaggacggcaactcctagggagagtagcaacagtgctgaactttctccatttatagacaatttgtctttctgtggactgatgaacatcaaggcttttagagatactttgtaaccctttccagtcAACAATttttaatcttaggtcttctgaaatctcttttgtt
>TU1479285
TTGAAGAAGTAGCCACAAGCCAATCTTTATTGATTACGGTACATATTCAGCAACACGACATACCGGTACgaccattaaatacattttagtaaTAGACCTGCAACCCCTGGCAAAGGCAATTGGAATATCAGGCACTAGAGTTGTTTGTTGGTGGTTGAGTGTGCTGCACCACTATTCCTGCCCGCTTGTCAAAATAGACTTTCACAAACAGGCTGTCCCCAAAAATACTTACGTAAAACCGTGAGTTACACGCACTCAAACTCTGAGTATAATCCTTtccaatccttgtcatatgaagacaaATGTAGAATACATAAAACAGTAGGGAACAAATGATCACCGTACACAAACGAGTGAAGTGGTGAaaaaaaagatcaaggacaacaaccacccgagccactgcctgttcatcccgctatcatccagaaggcgaggtcagtataggtgtatcaaagctgggaccgagagacagcttctatctcaaggccatcagactgttaaacagctgctGCCagcatactgactcatctctagccactttaataataaaaaaaatggatgtaaatgtatcactagtcactttaaaaaaaatgccaCTTTATAggttttcataccctacattactcatctcatatgtatatactgtatcttggccatcactcatccatatatttatatgtacatattcttcttcattcctttacacttgtgtgtgaaattttagatgacttgttagatattactgcatggtcggaactagaagccatgtgtatgtgaccaataaaatttgatttgaaaacagaAGGGCAGATGGTTGATTGCACGGAATGTGACACCTGACCACAATAAAGGTCAACTGTCAAAGGACATTAGAACATACAACAAATAACTAGTAGGGGAGAGAACATGGGTgactctgaaatggcaccctattttcccTTGCATGCCATTTCAGATGGAGGCCATTTGTGAGTGCAGCACACACAACTCTGTACATACCAGGTTATTAACAGGTAGAGAGAATTTAGTCACAATGAACACAAAATGATGCATTCAAAGATCCCAGATACAAGGCTGATGTCACTATACTTCCTCAAACTGTCCTTCCTCAGAATTGTCCCAAACAGTCTCAGCAACCCAGAACCAAATCTCAACATCAAACAAAAACCTTCAACAAAGTAACTTGGTCTCTCCCCACATCTTAGTCATTTGGTAAAATACCACCATGCACATACGGTTAGTTCCAAATGAGATCCTGGACAGATAAAGACTACAGAACATATTATTTAAAAAGGCCATAAATATAGTAAAAGTAAAACAGACTTTACATTCAGTAAATCAACAGTCAGAACCATGTAGTTGATCCGCTTGGCTTGTGATGCATTGTAACGTTGAGGCTTGAAGAATTACGTTTTTCTTCTGCAGTCTGTCTTTGAGAcaatgggagaatctcaattgcatactacTTGCATCCTCTCTCGCCTCCTTCAAGAAACCCAAagttctctgaccttctcctccaatgggttttgagaaagaGGCGAGGACATGAGAAGTATGCAGTGGAGATTCTCCCATAGAAGAGCCCATTCTCACCCTTTTCACATTATCGTGCCAACCCAAACCGTACCGGCTCAGATTTTGGTTTCACATTTTCCTTTCTAGCGTGGTTTCAGCCAGTACAGTACAGCTTGGATTGattcagtagtgtgaaaaggacCTCTCTCTCAGGGAGTAGTATGTTTCTGTCAGTGTTATAAATGTTCTATGAGTTGGTTTAGAAACCCAGAGGGTGAGGAGCGACGATGCCTCCATTCTCCACTACGGCAGCAGATATGGCCTTCATGTTCTTAAAGACCTGGGTGGTGGAACTAGACTTCAGGTCCTTGACGTTCTTCATGATCCTGTCATAGgcctggtggtggagggaggagaggggggcagagatgagacttgtgtatgtacagtgtgcacacacacaatataGTGTCAAGAAAAAATGTGTGAACCCTTTGGGAATACCTGATTTCCGCATACATTTGTCATAgtggcggcaagtagcctagtggttagagcgtaggactAGCAAACGAAAGGTTGTTATTTAGCAAAAAGTTAACAAATGTtatttttggacagcagtggcttcttctgtggtgtcctcccatgaacactatTCTTGTTtcgtgttttacgtatcgtagactcgtcaagagatgttagcatgttccagagatttctgtaagtctttagctgacactaggattcttcttaacctcattgagcattctgcgttgtgctcttgcagtcatctttgcaggacggcaactcctagggagagtagcaacagtgctgaactttctccatttatagacaatttgtctttctgtggactgatgaacatcaaggcttttagagatactttgtaaccctttccagtcAACAATttttaatcttaggtcttctgaaatctcttttgtt

Function

NR:

description
uncharacterized protein LOC100194706

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479286 False 2060 lncRNA 0.41 4 44937205 45000672
TU1479285 True 2481 lncRNA 0.41 3 44997734 45000672

Neighbor

gene id symbol gene type direction distance location
LOC110490127 LOC106602822 coding upstream 88691 44735760 ~ 44848514 (+)
cldn2 cldn7 coding upstream 215461 44719300 ~ 44721744 (+)
LOC110490732 LOC106602993 coding upstream 288375 44646793 ~ 44648830 (+)
LOC110490121 LOC106602827 coding upstream 333406 44586285 ~ 44603799 (+)
cblb cblb coding upstream 610959 44173352 ~ 44326246 (+)
LOC110490132 LOC106602816 coding downstream 89473 45090145 ~ 45151980 (+)
LOC110490134 LOC106602815 coding downstream 157397 45158069 ~ 45174534 (+)
LOC110490135 NA coding downstream 192221 45192893 ~ 45196185 (+)
LOC118938959 NA coding downstream 286069 45286741 ~ 45286928 (+)
LOC118938961 NA coding downstream 286497 45287169 ~ 45287285 (+)
G1296452 NA non-coding upstream 5595 44931051 ~ 44931610 (+)
G1296446 NA non-coding upstream 12119 44924872 ~ 44925086 (+)
G1296412 NA non-coding upstream 71127 44863552 ~ 44866078 (+)
G1296410 NA non-coding upstream 75870 44861055 ~ 44861335 (+)
G1296334 NA non-coding upstream 261162 44675750 ~ 44676043 (+)
G1296527 NA non-coding downstream 91764 45092436 ~ 45144752 (+)
G1296611 NA non-coding downstream 189422 45190094 ~ 45191164 (+)
G1296623 NA non-coding downstream 208137 45208809 ~ 45209014 (+)
G1296689 NA non-coding downstream 322848 45323520 ~ 45323774 (+)
G1296185 NA other upstream 285126 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 356157 44547179 ~ 44581048 (+)
G1295845 NA other upstream 907344 44029436 ~ 44029861 (+)
G1295730 NA other upstream 1020726 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1253667 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1313580 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2569158 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 2945696 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3359156 48359799 ~ 48360553 (+)

Expression


Co-expression Network