G1296611


Basic Information

Item Value
gene id G1296611
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45190094 ~ 45191164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1479470
AGTTACTGAAATTTTAAACCACTTAGAAAGTTGTTATTATTGTGGCTTGTGACAGCTGCCACATTTTAGATATTGTAGGAATTATTTATGActtatagttattattattattctttacAACGCTACTCCTCTTACACTGTTTAAACTAGAAAACGTTCAAACTTTAAAACTCTCGAATAGTGTGCTTGCATACAACTTTTTGATAATTATTCaactttttgtaaaaaaaattgtccaaCATCCACTTTCATGGGATTTCCTCAGCATTTTAAAGGTTCCATTGTGATATCATCACTCCCAACATTCTATTGTACTCAATGTAAACTTTGACACAAATCTGCTACTTGGACCCCTTTCTCAACAACTTAGACAAAAAGTTAGAGCGTGTGAAATCTTATTCTACTCCTCAGAGCAGAATTATCTGGTACCAATAAAAATGACAGCTATTTTAGTAACTGCATTAACTACTTTTTGTCTCAACTTTAACAAACAACTTGACATTTGTATCACTTACCCAGCGCTTTAGACAAAAACTGAAAGAGTATGACATCTTGGTCTACTCCTCTGCTATTTATACATAACTGTGGCTTTGTTCAGGGGCCAATACCATTATAACCATACGACATGGAGtcaaagtgcattcggaaagtattcagaccccttgactttttccacattttgttacattacagccttattctaaaatgtattaaataaaatgagtttctcatcaatctacacacaatgccccataatgacaaagcaaaaacagggttttagaaatgttcgcaaatgttttaaaaataaaaacagataccttacttacataagtattcagacactttgctatgagacgcgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctgtggtacattcaattgattgaacatgatttggaaaggctgtctatataaggtcccacagttgacattgcatctcagagcaaaaagcaagccatgaggtcgaaggaattgtccatagagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1479470 True 1051 lncRNA 0.35 2 45190094 45191164

Neighbor

gene id symbol gene type direction distance location
LOC110490134 LOC106602815 coding upstream 15560 45158069 ~ 45174534 (+)
LOC110490132 LOC106602816 coding upstream 38114 45090145 ~ 45151980 (+)
LOC110490129 LOC106602819 coding upstream 196199 44937985 ~ 44993895 (+)
LOC110490127 LOC106602822 coding upstream 341580 44735760 ~ 44848514 (+)
cldn2 cldn7 coding upstream 468350 44719300 ~ 44721744 (+)
LOC110490135 NA coding downstream 1729 45192893 ~ 45196185 (+)
LOC118938959 NA coding downstream 95577 45286741 ~ 45286928 (+)
LOC118938961 NA coding downstream 96005 45287169 ~ 45287285 (+)
LOC110490136 NA coding downstream 105372 45296536 ~ 45299495 (+)
LOC110490137 NA coding downstream 147386 45338550 ~ 45376332 (+)
G1296527 NA non-coding upstream 45342 45092436 ~ 45144752 (+)
G1296430 NA non-coding upstream 189422 44937205 ~ 45000672 (+)
G1296481 NA non-coding upstream 203622 44986018 ~ 44986472 (+)
G1296462 NA non-coding upstream 210803 44945562 ~ 44979291 (+)
G1296623 NA non-coding downstream 17645 45208809 ~ 45209014 (+)
G1296689 NA non-coding downstream 132356 45323520 ~ 45323774 (+)
G1297355 NA non-coding downstream 142867 45334031 ~ 45334294 (+)
G1297413 NA non-coding downstream 228256 45419420 ~ 45419642 (+)
G1297416 NA non-coding downstream 239041 45430205 ~ 45430471 (+)
G1296185 NA other upstream 538015 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 609046 44547179 ~ 44581048 (+)
cblb cblb other upstream 863915 44173352 ~ 44326246 (+)
G1295845 NA other upstream 1160233 44029436 ~ 44029861 (+)
G1295730 NA other upstream 1273615 43916178 ~ 43916479 (+)
G1298452 NA other downstream 1063175 46254339 ~ 46260437 (+)
brd1a LOC106575995 other downstream 1123088 46293582 ~ 46316075 (+)
G1299894 NA other downstream 2378666 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 2755204 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 3168664 48359799 ~ 48360553 (+)

Expression


Co-expression Network