Gene
RNA
| Item | Value |
|---|---|
| gene id | G1297577 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 45495755 ~ 45503112 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vacuolar protein sorting-associated protein 37D isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1480580 | False | 428 | TUCP | 0.52 | 2 | 45495755 | 45503112 |
| TU1480579 | True | 545 | lncRNA | 0.49 | 2 | 45502130 | 45503112 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pparaa | NA | coding | downstream | 4135 | 45493665 ~ 45497995 (-) |
| cdpf1 | cdpf1 | coding | downstream | 20314 | 45472681 ~ 45481816 (-) |
| cdkn1ba | LOC106575072 | coding | downstream | 35348 | 45463425 ~ 45466782 (-) |
| LOC110490131 | LOC106602818 | coding | downstream | 429575 | 45038490 ~ 45072555 (-) |
| acadvl | acadvl | coding | downstream | 469022 | 44997734 ~ 45033108 (-) |
| LOC110490142 | NA | coding | upstream | 15014 | 45518126 ~ 45552550 (-) |
| atxn10 | atxn10 | coding | upstream | 94849 | 45597961 ~ 45610166 (-) |
| LOC110490145 | LOC106575954 | coding | upstream | 153743 | 45656855 ~ 45669140 (-) |
| LOC110490151 | NA | coding | upstream | 212879 | 45715991 ~ 45717142 (-) |
| LOC110490153 | LOC106575999 | coding | upstream | 337009 | 45828313 ~ 45889389 (-) |
| G1297643 | NA | non-coding | downstream | 6604 | 45495277 ~ 45495526 (-) |
| G1297602 | NA | non-coding | downstream | 69673 | 45432094 ~ 45432457 (-) |
| G1297599 | NA | non-coding | downstream | 73326 | 45428590 ~ 45428804 (-) |
| G1297283 | NA | non-coding | downstream | 289589 | 45209213 ~ 45212541 (-) |
| G1297269 | NA | non-coding | downstream | 311310 | 45190192 ~ 45190820 (-) |
| G1297647 | NA | non-coding | upstream | 2476 | 45505588 ~ 45505803 (-) |
| G1297652 | NA | non-coding | upstream | 52935 | 45556047 ~ 45556297 (-) |
| G1297656 | NA | non-coding | upstream | 61451 | 45564563 ~ 45564870 (-) |
| G1297658 | NA | non-coding | upstream | 64294 | 45567406 ~ 45567669 (-) |
| G1297112 | NA | other | downstream | 547221 | 44949380 ~ 44954909 (-) |
| G1297069 | NA | other | downstream | 625360 | 44861404 ~ 44876770 (-) |
| G1296025 | NA | other | downstream | 1361702 | 44139273 ~ 44140428 (-) |
| G1295948 | LOC106602830 | other | downstream | 1477555 | 44005461 ~ 44024575 (-) |
| G1298047 | kdm5a | other | upstream | 248949 | 45752061 ~ 45762385 (-) |
| G1298177 | NA | other | upstream | 452947 | 45956059 ~ 45989263 (-) |
| G1298541 | LOC106575995 | other | upstream | 793956 | 46295361 ~ 46297952 (-) |
| tafa5a | fam19a5 | other | upstream | 1319151 | 46822067 ~ 46995100 (-) |
| tbc1d22a | tbc1d22a | other | upstream | 1714424 | 47217532 ~ 47405004 (-) |
| klf5l | LOC106602821 | coding | downstream | 606055 | 44864937 ~ 44889700 (-) |
