G1299840


Basic Information

Item Value
gene id G1299840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47492786 ~ 47495801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1483018
aaaaatgtacatcACATATTTTACAATAGACATTGTCTTCTTTAAAAACGCAAAGGATTACGTTATTTTATATAAATTCCTCTTTTGTCATTTTAGTCCTTGGACACACAGATGACATAATTACCCACAACTGTCAGATGATTGCAGTATATTGAACTTCGCAGTGATATACTGTACGGGAATATCATGAAGTAATTGACTAACGTTTACATTTAGTTAGAACTAATACTTGGTTAACACAATGAGACGCACAGAAGGAGACCAATAGAAACTAGAGTAGAAACCAGTGAACAGCAGCTCTCCGAGTCACCATGATGACCTCTGCTGCCTGTAAGGAAGGCCTGTGAGTGATCCAAAAACAGCTAAAAGATTATCATGACTGTACCATGTACCGCACAGCACTACCCTATGAACGATCACTGACATTTTTTTGTTGCAGCGTGAATATAATCTGACTAGAATGTTCTCGGCTGTCACAGTCTACCTactgttagcctggtcccaggtctgtcacTAGATGCATGATTCAACTCCTTGGACTTTAATCACCATGCTACTAAGTACATGTACACAGTATATGCTATGACAACAAACTCGACAGAAGAGCTAAAACTTTAGCTTTAGCTATTAAAGTATTATAAAACAGATCAGGGATCAGGGTTACGTTTGCCGTTGGGATGACGCTGAGCAGCAGAGGTTGTCCTGAGACCAGTCTGAGCAGATTTTTTAAAAAGCTGACAGTTGACACACTAACTCAAAAACGCAAGAGGAAGATGTCTGTCCAGTCTTCATGACTCCACCTGTGGCAAGGAGCTCAAACCGGCAttccaaacaaaacaagaaattaATTCTGTCTTTTAACCCAACCTTCAGTAAACATGTAGGTGTTGGCAGAGCATGGGCAGCagtaaaaagaagaaaaaaaacaacattttggcaacaacaaaaaaaatgaactAGGAGTTTTACAgcagtaacacaatacattctgtGTGTTTCTTTTAGGACAGACCCTGATTTCAAAGTTGGTGGTTACTACTCGACTAAGTTCCAGGTAAGCATTAAGACGACAGTAACGTGAAGTCAAACAACCATTCAAATCAACCTATAGAAATGACATTTCACACCCAGTCATAAGACGATAACTGACACAGTTCATACGGGCTTGTTAACAGTGTGGGAAGATGAATGCTTTTTAGGGGACTAGCTTGTTGTGCTGAGAGGCAAAAAAACAAAAGGATCTGAGAGCATAGTATAATCTACTCTCTCATTTGAAGCAAACGATAGACCAGAAATACGCCCAGATGTCCACAATAACTCTTCCAGCCATTTTACAAAACACAGAAAGGTGTCCACATCCACTGGGTTTGGCATTCATGACAATTCTACATATCAAACCTATCTGAGAAATAAAAAGACCAGCTTTTAAACCCACACCGGTGACAATGATAAAGTGACATTGAAATATTCCGTTCAAAACTACTTCTTCATCCTGCTGTGAATGAAGACTACGGAACCAAGCCAGAAATACTGACAAACTCCCGGACGAATTAACTAGTTACTAGTCAAGTTAACCAAGTTCAAATTTACTCCTGAATAGGACAGCACATTGTACACATCTGACCACTCCAGTGTTAATACTACAGGTTGGTATTAGTGGTATTACCGTTAAAAAACTACCATAGTATTACTATACCGTAACATGTCACTAAATACTGAAGTAACAGGTACTGGGCCTTGAGACACTGCAAAAATCATTAGTATGTTTATGTGACCTACAGTACACACCTTAAGGATGTGTTCGTCTACTAGGCTAAAGCCAAGGCATTAACTCATCTTTTAGGCCCCGGGGTTACTCAGCACACAAGTGTAGTTCACTGAACCAGCAATGTTACATTTAAACTACGTACCTTCAGTTTCGACACATTATTCAGGGTTTAGGTCTGCTATGACTCTAGTTTTATAACACAATCCACAGATCCAGGACCTGCCTTTAACTAAGTCCAGTTCCTCATCATTCCATTGGTTATTAGAAAAACAAGCGGAATTGAAAAGAAAAGGCATTTGAAAACGTTTCACAACGAACATCATCGCCAAGGGTCCCCACCGCTGTGCGTGACACACAGTACAGGTCAGTCGTGAGTGTTGAACGCACAACACACATACACGTCATATGCAAACAGACATCTGAAAGCAGACGGTTTGTTGCTGAAATGTGCGCGAGTGTCTCCGAGGACAAATCTACAGCAGCGATGTAAACGGATGGAAAAGGCTTCTTGTCGTGTTGAACGTGGTTTCCGATGCTAGCTCGATGTCCACAGCTTTTTGTTTTCTACACAAACATCTAGCTACCGTACGGTTCCGTGCAAGACCAGCAGTAACACCGACTCAAGACGTCacgagaaagagagaagacaggTGAGTAGAGACGCACGATGTCTtggcagctcacacacacacatctctctgaaGCAAATGAaagctggcaggcaggcaggagagCCAGCTCCTTTCCCTATGATGAGAAGTCTGTGTTAAAAATAatgacccccccctccccatccttCTTCCTACAGTGTTGGAATGTATTCACCATCCCTATTGGACTATAAGTcccacctccacacacaccagacagaggGGCGAGCGCGCACACCAGACAGAGGGGCGAGCGCGCACACCAGACACCTCTCAGTCATAAAAGAAGACTGTccagtcactgtaaataagagagggaggagaagaggtgtGTCCCATCACTTCCCCCAATTGTCTTTTCTCCAGCCAGGGAGGGTTCAGGGCTCAGGGCTGCCCAAGGGCTGTCTGGAGGTGGTTGTGATCTTCATGTACTGGGTGAAGATCGCCTCGAAGGCCTCGTCTCGATGGATCATGGC

Function

NR:

description
GRAM domain-containing protein 4-like isoform X5

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1483018 True 2894 lncRNA 0.43 4 47492786 47495801

Neighbor

gene id symbol gene type direction distance location
cerk LOC106575992 coding upstream 49735 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1176711 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1224053 46260593 ~ 46268733 (+)
LOC110490155 pim3 coding upstream 1319969 46168371 ~ 46172817 (+)
il17rel LOC106575998 coding upstream 1553981 45902083 ~ 45938805 (+)
srr LOC106575990 coding downstream 223117 47717685 ~ 47723038 (+)
alg10 LOC106575988 coding downstream 237718 47733519 ~ 47736943 (+)
LOC110490177 NA coding downstream 503327 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 622973 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 651271 48147072 ~ 48161884 (+)
G1299825 NA non-coding upstream 55231 47429613 ~ 47437555 (+)
G1299822 NA non-coding upstream 66928 47425647 ~ 47425858 (+)
G1299821 NA non-coding upstream 68197 47424368 ~ 47424589 (+)
G1299769 NA non-coding upstream 145101 47347385 ~ 47347685 (+)
G1299737 NA non-coding upstream 190162 47301449 ~ 47302624 (+)
G1299893 NA non-coding downstream 72733 47568534 ~ 47568819 (+)
G1300334 LOC105030512 non-coding downstream 241580 47737381 ~ 47737608 (+)
G1300346 NA non-coding downstream 262283 47758084 ~ 47758394 (+)
G1300348 NA non-coding downstream 266468 47762269 ~ 47762483 (+)
G1298452 NA other upstream 1232349 46254339 ~ 46260437 (+)
G1296185 NA other upstream 2840707 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 2911738 44547179 ~ 44581048 (+)
cblb cblb other upstream 3166607 44173352 ~ 44326246 (+)
G1299894 NA other downstream 74029 47569830 ~ 47570663 (+)
G1300598 LOC106575986 other downstream 450567 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 864027 48359799 ~ 48360553 (+)
G1301200 NA other downstream 1088906 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1434245 48930046 ~ 48930588 (+)

Expression


Co-expression Network