G1300334 (LOC105030512)


Basic Information

Item Value
gene id G1300334
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47737381 ~ 47737608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1483563
caatgtccgtactgtgagacacttaagacagtgctacagggagacaggacagacagctgtatGTCCTCGCAGTGGccgaccacatgtaacaacacctgcacaggatcggaacatccgaacatcacacccgcgggacaggcacaggatggcaacaacaactgcccgagttaaaccaggaacgcacaatccctccatcagtgctcagactgtctgcaataggctgagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1483563 True 228 lncRNA 0.54 1 47737381 47737608

Neighbor

gene id symbol gene type direction distance location
alg10 LOC106575988 coding upstream 438 47733519 ~ 47736943 (+)
srr LOC106575990 coding upstream 14343 47717685 ~ 47723038 (+)
cerk LOC106575992 coding upstream 294330 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1421306 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1468648 46260593 ~ 46268733 (+)
LOC110490177 NA coding downstream 261520 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 381166 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 409464 48147072 ~ 48161884 (+)
LOC118938805 NA coding downstream 437836 48175444 ~ 48179144 (+)
LOC110490846 LOC106576099 coding downstream 526873 48264481 ~ 48267175 (+)
G1299893 NA non-coding upstream 168562 47568534 ~ 47568819 (+)
G1299840 NA non-coding upstream 241580 47492786 ~ 47495801 (+)
G1299825 NA non-coding upstream 299826 47429613 ~ 47437555 (+)
G1299822 NA non-coding upstream 311523 47425647 ~ 47425858 (+)
G1300346 NA non-coding downstream 20476 47758084 ~ 47758394 (+)
G1300348 NA non-coding downstream 24661 47762269 ~ 47762483 (+)
G1300363 NA non-coding downstream 49377 47786985 ~ 47787191 (+)
G1300367 NA non-coding downstream 54252 47791860 ~ 47792167 (+)
G1300373 NA non-coding downstream 66443 47804051 ~ 47805212 (+)
G1299894 NA other upstream 166718 47569830 ~ 47570663 (+)
G1298452 NA other upstream 1476944 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3085302 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 3156333 44547179 ~ 44581048 (+)
G1300598 LOC106575986 other downstream 208760 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 622220 48359799 ~ 48360553 (+)
G1301200 NA other downstream 847099 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1192438 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1657615 49395223 ~ 49396921 (+)

Expression


Co-expression Network