G1300373


Basic Information

Item Value
gene id G1300373
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47804051 ~ 47805212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1483606
acacatggaatcatgtagtaaccaaaaaaatgttaaacaaattgccacaatatattttatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgctcactcttggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaatttgtggaatttctttccatcttaatgcacttgagccaatcagttgtgttgttacaaGGTAGGTGTGGTAGCCCTATTGGGTGAAACACCAAgcccagctcaaataagcaaagagaaaccacagtccatcattactttaagaaattaaggtcagtcaatacggaacatttcaagaactttgaaagtttcttcaaatgcagtcacaaaaaccatcaagcgccatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagataagttcattagttgcCAGCCTCAGATATTGCATCCCAAGtaaatgattcacagagttcaagtaacagacacatcaactgttcagaggacactgcatgaatcaggccttcatggttgaattgctgcaaagaaaccattcctaaaggacaccaataataagaagacttgcttgagccaagaaacatgagcaatggacattagacccgtggaaatctgtcctttggtctgatgagtccaaatgggagatttttagttccaaccgctgtgtctttgcgagacgcagagtaggtgaatggaggacctccgcatgtgtggttcccaccgtgaagcgtgGAGGATATGCTGTgatggtgctttactggtgacactgtcagtgatttgtttggaattcaaggcacacttaaccagcatggctaccacagcattctgcagcaatactccatcccatctggtttgcgcttagtgggactatcatttgtttttcaacgggacaatgacccaacacaccgacggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccagcctcaacacaattgagatggtttgggatgagttggaccgcagagtgaaggaaaagcagccaacaaatgaaGCTagttgagtgaatgccaagagtgtgcaaagctgccatcaaggaaaaggttgg
>TU1483605
tggcattctctcaaccagcttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaatttgtggaatttctttccatcttaatgcacttgagccaatcagttgtgttgttacaaGGTAGGTGTGGTAGCCCTATTGGGTGAAACACCAAgcccagctcaaataagcaaagagaaaccacagtccatcattactttaagaaattaaggtcagtcaatacggaacatttcaagaactttgaaagtttcttcaaatgcagtcacaaaaaccatcaagcgccatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagataagttcattagttgcCAGCCTCAGATATTGCATCCCAAGtaaatgattcacagagttcaagtaacagacacatcaactgttcagaggacactgcatgaatcaggccttcatggttgaattgctgcaaagaaaccattcctaaaggacaccaataataagaagacttgcttgagccaagaaacatgagcaatggacattagacccgtggaaatctgtcctttggtctgatgagtccaaatgggagatttttagttccaaccgctgtgtctttgcgagacgcagagtaggtgaatggaggacctccgcatgtgtggttcccaccgtgaagcgtgGAGGATATGCTGTgatggtgctttactggtgacactgtcagtgatttgtttggaattcaaggcacacttaaccagcatggctaccacagcattctgcagcaatactccatcccatctggtttgcgcttagtgggactatcatttgtttttcaacgggacaatgacccaacacaccgacggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccagcctcaacacaattgagatggtttgggatgagttggaccgcagagtgaaggaaaagcagccaacaaatgaaGCTagttgagtgaatgccaagagtgtgcaaagctgccatcaaggaaaaggttgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1483606 False 1162 lncRNA 0.44 1 47804051 47805212
TU1483605 True 1046 lncRNA 0.45 1 47804167 47805212

Neighbor

gene id symbol gene type direction distance location
alg10 LOC106575988 coding upstream 67108 47733519 ~ 47736943 (+)
srr LOC106575990 coding upstream 81013 47717685 ~ 47723038 (+)
cerk LOC106575992 coding upstream 361000 47412437 ~ 47443051 (+)
brd1a LOC106575995 coding upstream 1487976 46293582 ~ 46316075 (+)
alg12 alg12 coding upstream 1535318 46260593 ~ 46268733 (+)
LOC110490177 NA coding downstream 193916 47999128 ~ 48001885 (+)
LOC110490734 LOC106576001 coding downstream 313562 48118774 ~ 48146269 (+)
slco1d1 LOC106575962 coding downstream 341860 48147072 ~ 48161884 (+)
LOC118938805 NA coding downstream 370232 48175444 ~ 48179144 (+)
LOC110490846 LOC106576099 coding downstream 459269 48264481 ~ 48267175 (+)
G1300367 NA non-coding upstream 11884 47791860 ~ 47792167 (+)
G1300363 NA non-coding upstream 16860 47786985 ~ 47787191 (+)
G1300348 NA non-coding upstream 41568 47762269 ~ 47762483 (+)
G1300346 NA non-coding upstream 45657 47758084 ~ 47758394 (+)
G1300334 LOC105030512 non-coding upstream 66443 47737381 ~ 47737608 (+)
G1300384 NA non-coding downstream 17227 47822439 ~ 47823290 (+)
G1300410 NA non-coding downstream 42943 47848155 ~ 47867289 (+)
G1300580 NA non-coding downstream 125913 47931125 ~ 47931350 (+)
G1300583 NA non-coding downstream 127215 47932427 ~ 47932677 (+)
G1300585 NA non-coding downstream 128174 47933386 ~ 47934796 (+)
G1299894 NA other upstream 233388 47569830 ~ 47570663 (+)
G1298452 NA other upstream 1543614 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3151972 44649701 ~ 44652079 (+)
G1296266 LOC106602826 other upstream 3223003 44547179 ~ 44581048 (+)
G1300598 LOC106575986 other downstream 141156 47946368 ~ 47947892 (+)
kiss2 kiss2 other downstream 554616 48359799 ~ 48360553 (+)
G1301200 NA other downstream 779495 48584707 ~ 48585263 (+)
G1301458 NA other downstream 1124834 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1590011 49395223 ~ 49396921 (+)

Expression


Co-expression Network