XLOC_031978


Basic Information

Item Value
gene id XLOC_031978
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18712762 ~ 18728431 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064831
AAAACTCCCACAAAGGTCAGAGTTCTctgaggaaaaacaaaaaaacatgcattacATATTTCccaataaaacacaaacacagttcaAGAGAAAAGAATGCTATTTATTAATATAGGCTGAAATAATCTCCATACAACATGGAAAGACTTTTCTGTGTCCTCAACAATCACATTCTATCAAGGGTAagggaaaaacatttaaaagctgTTGAATCTCAGTACAGTCATGTGGTTTCTATCTGAACAATAGAGCAACAGTTCACAAGATGCCATCCAACCCATCATTCCATTTAAACACTAGAATGTCACAGATTGGAATAAACCCACAGTGCTTGGTTGTTGAAGCTCACATCTTGAGACGCAGAGCATGGTGATGACACTAAAATCTGCTGATTCAAATAAAAGTTATACAAAGAAACAAGTGCATGATCCCCCTCCCCCCTCCCAGATATCCTTGTAAGAATAGCATGTCTGGACATACAGTCCTCTCAAACATGTGCATAGATTCTTAATCCTTTCACAACATCTTAACATTAGTCTAAACCTAGATGGAGTATTTTCAACCCACACTCAAAAACTAGTACGTAAATCTAGTAGAAGTTCAAGTTCTATGTGTTGATCTACAATTTTCAGGCCTTTGCATACAGGCCTCTAATGAATTTCCAAACTATAAAAAGACAAGAGAATGGAATATCAAGCATTTGACACTGGACCTCGTTGGGAAACATCAGGTAAGGTAAAAATCAAACAGTGGTAGGTCCTTCCACAACCTAACCAGTAAACAAAATTCTATTTGCATGTAAAGTGATACAAAAACATCTCATAAGTACTCTACTTTAAGAAATAAAACGCATAGGTTCTTTAATATCTAATATTTGGTAAATGTCTGCTACAGattaaaattcaaaacataatttttttttcaaatccatAACCTTCAGTGCTTAGAGttgatctttttttgttgttgttttaaaatatttttctgatTTGTTAATCAATTAGTTAAATTCTCATGATAATCAACATCTTAACAGTGGAACTGGAACTCTGGACCCCTAATCTTCCTGAGAAAAAATCCAAGTCTTTTGTCAGTGTGCAAGACAGAATCAtttttttgaaaagaaaacataaaGACATTAGCATCAGTTCAACATACAACATAAACAACAGAATTCATGAGGAAAAAATACAAAGTGACACTAAAACAACCCCAGAGTTCAGCAATAGCATACTTCATTTTCGTGTTATTAAACTGATGTTGTCTGTAggttgttttcttcttttttgcaaattcagacatttgaaaaaaaaaataggattcaagatttgaaaaaaaagaaaaaactcttCAGAATTGAAATGATAGGCTcttatagagaaaaaaaaagagttttgatctttttttttatttatttttttttagattttttagttgagcaaaaaaaaaacaaaaaacaaacaaacaaactgtaacTGAAATTTAAATGAAAACGTAACTGAAATGAAAACACTATGTAAATGATCACCTTTGTGGGTATTTTCCCAATAAAAACCACCATGAGAATACAATTTTACAGGTTTCATACATTAGGATAAAAAGTAGTCCTTGAGTAAACATTGACACACAAATTGTCATGATCTCCCCTGCAATTATTTTTTGAGTACAAGCAAGGGAAAAagacactcattctcacacacacacacacacacacaaagcagtaTAACAAACAAAATGGATTATAATTGCTGGCAGAtacccaacaacaacaacaatcagcGATTAGAGAGCAAATGAACTAAAGCACTCAAACTCACGCATTCCAAATATTTCTCTTTGTTGAGAAGTTATTTGTGAAAATGTTACAAATACATTAAAAGGTGTCAGACCCAAACAAAatgcaagaaaaaataaattcacattttACAATTGGCGTGCTTTAATTCAAGTATTGGTAgagatatatattttgatatgttTATGATTTTTCAAACTTTGCCTAAAGAGAAACATTGTTCAGAATGATGGGGTTCAACATAATGATTGAAGTTATCCACAAATACTGCATGGATGTCTTTAGTCCATATAACAAACACACAACCCCCTCAGTAAGACTGTTTGGTTTTGATCAATCGCTGATCACTTTCTTCTTTTAGGCAAATTCCCACCGATGACACACCCTATTGCTCGTTTTCAAATCATTTTTTTACCCAGGAGTTTTAAAAGTGAAGGATTTGGAGATCTGATAGCATTTTTtctacaaaataaacatgataatACAGAGAATAAAGTTAACTGTAGTCATAGTCTACCTATGCTGGTGTCACCAGAGACGTCCTGTGATGTTTTCAGTCACATTGTGGTTCACTGTCAGTCAGCTGTGACTGAATTTGGAACAAGGCAGTTACATACACAGgcaacagtgaaatgaactgaGATGACAATTGTACAGTTCTTTTtacaaacaaactttttttaaaaggcaCTCCAGCTTGCCATCAACCTTCAGGATGTGATCAGCAAACAGGAGATATCATCTGCAAGATgtgcattttgaaatgttttttttctccttcagtgtttacttgtttttgttttatataaaagataataaaatgcCATTTCATTTTTTGgtattcaaaaaacaaaacaaaacaaaagtaccaGGGATTACTCATTATCTGTACGCCATTAGCACACCACAACCCCCAATGCTGTTAAAAGTTCTAGCTAGTTATTCTTCTAATGACAGCAACAAGATTATCACAAATAATCAGCATATCCTCAACCCATTTTCAAACCCAATCCCACCTCAAACACACAAGAATCATCAAAGTGCCTTCAAACAGAAGTGCTCTACAACAAAACCACACATTGGAATTTAAGATGTGAAGTCAGCAATGCCACAGTGTACCTATATATCTTTATGCATACATTGGCACGTGAGACCATGAGGGGAATTCATCACAAGCAGCAGCAGAGAGGTACAATACGCAGGTCCCATTTACTGACGACTCGCCAACAATTCCTGTTCATCAGGATTGAAAACACCCTAACTAGCCACCCTCCAAAATGTATTGCCCCATTGATAAATATTCTGTCGTATTTCTTTCATGTACGCTTTGTAAGATTTGTACACACATAACTGAATGCGTAGACCCGCTTGAAATTGATAAATCTTTGAAACGATCAACTTTCATTAAACAAAAATGGTTAATCTTGTCATGCCCTGAGATTGTAGTGAACGAGATCTATCAGATTCAGCACAATTGGTGCGCAGACCTCCCGAAAAGAATTTGAACAAAATGCTTTGTGTCAGGAAACACCCTAAGTTCAACAAGGACGTCAATGGTCTTGTGTATGTAAGATAATATTACAGGAGGACTGCACAATTTTTAAACTTCCTTTCAAAGCCACAGATTGGCACAGGGCGGACATTACAAGCCCATCTTTTCTCACTTTGCATAGTCACAGCATGCCGTGTGCTGTAGTTAAAGCGCCAATGGCAGAAAGAGTCTGTCCATAGAAATACTGCTCGGACAGGGCTTTTCAAGTATGGGCAGCTTTTCTAGATAACAGGGTTGGCTTCAGTGAGGCCACACAAAAGAGTGGATGTTAGCAGCTGAGTTAGAGGTGGGATGTCCAGGGTTaggtcacacactcacacacacacatcaataaaAGAGCCCCTATTCTAAATGATCTAACACTGTAACAACAAAAACTAGTTATTTTCACACGAAACATGGCCTACATCACAGCATCTTCATTTGCATCCGTGACACAGGATAAGTATACCGAGGCACCTCTTTTAAAGTGTATCCACATGCGCTGCAGGCAGTTAAAGAATGCTGAATGAAGACCAACAGAatgtgtggagaaaaaaaaagtcataatatACAACACTGGCGATTCCATTCAGTCTTAAATTCCAGCAAAACCACATGAGGGATGGAGTGGGTTAGGTTGCATGAGAGCCGTCATCCCAGATGGAACGAGGGACATTTGAAGATCTGTACCTAAGTTACTACTGCAAACATCACATCATCGTCCGTCCATATCATCATCACATCATAATGTCCTTTCCTTCATTCCACAGAGGAATCTGCTACTGAGAATCAAATATCCTCCATCAGTTTCCACACTGAGGCACTGACAGCCTCTTTTTCAAATCCAATCCAACTGAAGTGCCTCCTCAGGACAGAATAAAGTCTTTTGACTGTATCAAAGCAACAACGACATTCACTTTGGGTAGAGTGAGAAGAGAAAATATACAGACACAAAAAACATACATTGCAAGTTTCAACTGATTGTAGTTTTTGTTCGTCCCTTAATTCGGAATAGTCTGAAAAGTTTATTGATCAGAGATGGACGACAAACAAATGAGCCATTTGAATACCAGTAaggtgtatatataaaaaaggtAACAGTTAAAAGTtgccttaagatttttttttgtttcttttcatttttttttaacaatacgcTCCATCAACTGATTTATTGGCTTTCAGAAGGAGCACTGCTCTTGTAATAAGTGCTTTGCTAATACCTCTTAAAGAAGTGACTTATAAAATGTACATGTCTTTTATGTTTGTACCAAACGCAAGAATCTCTTATTCTGTACTGCATTAAGAGAAACGCATTGTATTTGGTATTGTGCCTGACTTCCGAGCCATGTGTCTCCCGCTATGGATTCCATTTCTGTTTGGTGAAGAGATGTGGCTGGGAGACTGTGGCATCCCACACATGCCAAGTGGTAAACCGCATGGAGTGATGACAAACACAGTTAACAGTTCCTCCTTTCCACAAATATACTAGTGAACAGCCAGAAAGGCAGACAAACAGTTCAAGGCAAGGCGGAAAAATGAGTCCAAAGATTCAATTCTGCTATAGTCTTCagcaaaaacaagaaaaaaaacagtttcaGTAAGCTTCAGTGTGGACGGAAGAAAGCGTCTCTGGCTTCTATTGCACAATGCATCAGAATGAATTCTCTGTTGCATCTCATTAAAAATGGCTGACCACATAGTAACTGAATAGCGTTTGATTGATTCAGCACTGAAGTCGTTTAGGTATCATTAAAAAGCATCCACTGAGTGTTTTTAACAGTGGTAAAGTACTTACACACAGATGCTTGGTCAAGTTCCAGCAGACACACTGACATTCATTTATCTAAATCGAAGCTTAACATTCAGCTTATTTAACCATACACATATTaaacgaaaataaaaaaaaagagtgtgaGTAAAACGCAACAGAGCAGTGCAGCTCCCTTTTAATTACGAACAGAATTAAAGACGAAACGTATCATTGGTGATTAGTCATGCTGACAGGCCACTGCTCATTAGCTCTGGCCTATTCGCTGGCTCAGAAACAGAACTGTGCAACTTAGGAAATTGGTTGATGTTGTTGttcttataaaataaaactttaggAGGTCATGGAGAGAGAGCACTTACGGCTAATACGTTGTGAAAAAGTGATGCAGATTTTCAAACCAAAAAGTACAAGGATCATTCCAATCATCAGAAGAGTGTCATTATAGGGAAAGGTGTCATGAGGTCTCACTGTGCCTGGGTCGTTTTCAGATGGCTGCCACTTTTGCGGCTTCTCCTGAACAACAGTTTTGAACGAAAACAATCTTTGGAAACAAAAAAAGCATCAAAAAGCTCTTCTTCTATTGATTTATGTTTGTCAACGTCTTTGAACACGAAGATCCACGAACACACCAAATAGTCTGACGtaaaaaaacaggacaaaaaacagCAGTTGGAGGTTTGCAGCTGTCTCCCCTTCAACCTCTGGTAGAGTTCGACAAAAAGTGATTATCGCCACATTGATTTGCTTGAGATTTGATCCGTTGGGTCTTTTGACTTTGTTGGTTTATGATGTCTGATGCATCCTACATGCTCTCTCCACTCAGCAGGTCTCCTGGGAGCAGAGTATTTATTGGGATGGGGCTGCCGATTACCCTGGCATCGTCTCCGTTTGGGGGAGCCCATAAACTGGAGTACTGTGGCACACCACCCCAGAGCATGTCGCCTCCATTTCCGCTGCTGCTGTTCCCAGCACTGCAGACTGACTTGGTGCCTCCTCCTCCGCTCCAGAGGCCTGTGGGGTGGCTAGCAGTAGGGTTGCCCAGTCGGGGTTGACTGGAGCCTGGTGCTGGGCTGGCCTGCCAGCTAGTGGTGGGGGATTTAAATGGATTTGCTTTAGGCACCTGAGGAGTGAGGTTTCTCAGCACCAACCAGCTGCTTCCTCTGTTTGGACTGTCAGAGCTCCAAGTTCCCCCTTCTAAAACAAAAAGGATACAgGGCTAGTAAATCGAGTGTTTGCATGCCATACCTGCTGCTCTTGTTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064831 True 6364 lncRNA 0.38 3 18712762 18728431

Neighbor

gene id symbol gene type direction distance location
XLOC_031977 rhot1b coding upstream 117657 18569453 ~ 18595105 (+)
XLOC_031976 atad5b coding upstream 146238 18544791 ~ 18566524 (+)
XLOC_031975 suz12b coding upstream 168217 18531932 ~ 18544545 (+)
XLOC_031974 NA coding upstream 188816 18520859 ~ 18523946 (+)
XLOC_031973 rab11fip4b coding upstream 269787 18418651 ~ 18442975 (+)
XLOC_031979 NA coding downstream 151026 18879457 ~ 18880664 (+)
XLOC_031980 CR925723.4 coding downstream 296953 19025384 ~ 19054172 (+)
XLOC_031981 CR925723.2 coding downstream 318556 19046987 ~ 19049980 (+)
XLOC_031982 mchr1a coding downstream 654836 19383267 ~ 19384304 (+)
XLOC_031983 stx8 coding downstream 961033 19689464 ~ 19802580 (+)
XLOC_031969 BX005286.1 non-coding upstream 451346 18254400 ~ 18261416 (+)
XLOC_031965 NA non-coding upstream 1004980 17707009 ~ 17707782 (+)
XLOC_031964 CR391990.1 non-coding upstream 1099560 17612044 ~ 17613202 (+)
XLOC_031963 NA non-coding upstream 1179737 17532018 ~ 17533025 (+)
XLOC_031985 BX537296.1 non-coding downstream 1404101 20132532 ~ 20132629 (+)
XLOC_031986 BX537296.4 non-coding downstream 1446453 20174884 ~ 20174981 (+)
XLOC_031987 BX927341.3 non-coding downstream 1604916 20333347 ~ 20333444 (+)

Expression


Co-expression Network