G1300714


Basic Information

Item Value
gene id G1300714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48183005 ~ 48225469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1483973
catgagatggccgctgtctactgtcatgtggtgctgaatgacagattTCGCTTTACCGATTTCGCtgttgtccatggtgctgaaatatcCAAGTATTTCAGCACCAAGTATCTTGCTAGTTGGATCGAATTCTCCGcgttagctagccagagaaatgttgaaCAACATTATCCAACTTAGctgatcaaataattgagtttatgGTGTGAGAATTAGCTGGGTAATGAAGTCAGACAACTAGCTAACAGGAACGTTACAACATCGTATAAGCTAACGTTAGTAAACGAACCAACTCGCtatagtattaactggtatacGACTTCTTGCCGTTCCTCAAGTGATATTGTTAACgtagttgcttactggaccctggcaatctgtgtgaaatgttaacgAACTAACTATCTATGAACTAATGTTTTCCCTCTACAGTAACGTGGTGATTcattttcagaatgagagaattgGGTGAAAATCAGGCGTCAAGACATGAGTGTCATATGCAGTAAAGTCAtggcaacaaataacattggattgctttctACACATTTTTTAGCAGTGAGATAGGTTCACATTAACCACgttttattttacacacagagacacactgataacacactGATAATGTAGATCATAgtctttgttgtttaattagttaaaaccTGCCTTCCCCCTATTGTGGATACTTTAGAATGTTtcacctttttgggccctcaccagtttgcatccctgaATTACTCAAAAAAAGATCTGAATTGGGCTGTCTAAACACAGCCATAGAAACCTGGACATGCTCCAACTGAAATGTTCCCTCCTGTCAGCATTGATGTTGAATTACATTAAATACAACTTTTTGGTTCTCTCCCATTCCCTGTAGGTTTGTTGAACATGAGTGGAAATGAAACTCCAGCACACTGGTAACACTAGATGTGATTATAACTTCTCCTGGTGTATTGAACCTGCCTGTGGGTGCGGTGGAGATATTCCTGGGAGGTCTACTGAAGAGGTTGAGTTAGAGTTAGACCAAAACACACATGGGATTGTGCCTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1483973 True 1051 lncRNA 0.40 3 48183005 48225469

Neighbor

gene id symbol gene type direction distance location
LOC118938805 NA coding upstream 3861 48175444 ~ 48179144 (+)
slco1d1 LOC106575962 coding upstream 21121 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 36736 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 181120 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 446062 47733519 ~ 47736943 (+)
LOC110490846 LOC106576099 coding downstream 39012 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 75133 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 103328 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 110662 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 134330 48359799 ~ 48360553 (+)
G1300695 NA non-coding upstream 72667 48110087 ~ 48110338 (+)
G1300629 NA non-coding upstream 185917 47996712 ~ 47997088 (+)
G1300615 NA non-coding upstream 203718 47975647 ~ 47979287 (+)
G1300585 NA non-coding upstream 248209 47933386 ~ 47934796 (+)
G1300583 NA non-coding upstream 250328 47932427 ~ 47932677 (+)
G1300752 NA non-coding downstream 1667 48227136 ~ 48256446 (+)
G1300754 NA non-coding downstream 4244 48229713 ~ 48241799 (+)
G1300730 NA non-coding downstream 23787 48249256 ~ 48250110 (+)
G1300923 NA non-coding downstream 44477 48269946 ~ 48270171 (+)
G1300931 NA non-coding downstream 47725 48273194 ~ 48273489 (+)
G1300598 LOC106575986 other upstream 235113 47946368 ~ 47947892 (+)
G1299894 NA other upstream 612342 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1867003 46293582 ~ 46316075 (+)
G1298452 NA other upstream 1922568 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3530926 44649701 ~ 44652079 (+)
G1301200 NA other downstream 359238 48584707 ~ 48585263 (+)
G1301458 NA other downstream 704577 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1169754 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1172989 49398275 ~ 49410313 (+)

Expression


Co-expression Network