G1300886


Basic Information

Item Value
gene id G1300886
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48191240 ~ 48216996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1484202
gtgctgctgcgcctgccacaaggaagaggaggaacAATATTAGttattcatcagaccttcagaaatgggattgaaccatagaccattAAATTATTGACATTATAATAATTGGATTCAATTCTGCTTTTcctgtttactacttaatttcagaacatttctatgaactttcactttgcaagtgtggagtaggttgtgtaaaTAAGTGGGAAACATCccaattttaatgcttttaataATTTACTTACTAcatgtaaacaaaacaaaaaaagtagtatttgacaacaacaaaaaacggagGGAGCTCAACCAACGTTgagttgaggtgcaaccaaaacctttaatcatcatagaaaaggaaaaagCGCAACTCTTGCG
>TU1484203
gtgctgctgcgcctgccacaaggaagaggaggaacAATATTAGttattcatcagaccttcagaaatgggattgaaccatagaccattAAATTATTGACATTATAATAATTGGATTCAATTCTGCTTTTcctgtttactacttaatttcagaacatttctatgaactttcactttgcaagtgtggagtaggttgtgtaaaTAAGTGGGAAACATCccaattttaatgcttttaataATTTACTTACTACATGTAAAATAAAAAGTAGTatttgacaacaacaaaaaacggagGGAGCTCAACCAACGTTgagttgaggtgcaaccaaaacctttaatcatcatagaaaaggaaaaagCGCAACTCTTGCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106577468

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1484202 False 375 lncRNA 0.35 3 48191240 48216996
TU1484203 True 369 lncRNA 0.35 3 48191240 48216996
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938804 NA coding downstream 10299 48179278 ~ 48180941 (-)
LOC118938803 NA coding downstream 44888 48142165 ~ 48148218 (-)
LOC110490175 LOC106575984 coding downstream 87932 48001878 ~ 48103308 (-)
LOC110490173 LOC106575983 coding downstream 194936 47975615 ~ 47996304 (-)
LOC110490171 NA coding downstream 216167 47933355 ~ 47975073 (-)
LOC110490181 LOC106568775 coding upstream 4140 48221136 ~ 48221639 (-)
LOC118938921 NA coding upstream 10638 48227634 ~ 48229523 (-)
LOC118938890 NA coding upstream 22633 48239629 ~ 48240754 (-)
LOC110490179 LOC106568775 coding upstream 23795 48240791 ~ 48241911 (-)
LOC110516898 NA coding upstream 32682 48249678 ~ 48252315 (-)
G1300816 NA non-coding downstream 29350 48153966 ~ 48161890 (-)
G1300860 LOC106591259 non-coding downstream 69167 48121002 ~ 48122073 (-)
G1300858 NA non-coding downstream 71093 48118796 ~ 48120147 (-)
G1300850 NA non-coding downstream 82939 48108085 ~ 48108301 (-)
G1301032 NA non-coding upstream 62755 48279751 ~ 48281566 (-)
G1301035 NA non-coding upstream 67592 48284588 ~ 48284800 (-)
G1301060 NA non-coding upstream 117610 48334606 ~ 48335611 (-)
G1301065 NA non-coding upstream 133939 48350935 ~ 48351144 (-)
G1301068 NA non-coding upstream 135981 48352977 ~ 48353226 (-)
celsr1a LOC106576003 other downstream 487202 47584674 ~ 47707520 (-)
tbc1d22a tbc1d22a other downstream 971625 47217532 ~ 47405004 (-)
tafa5a fam19a5 other downstream 1237816 46822067 ~ 46995100 (-)
G1298541 LOC106575995 other downstream 1893288 46295361 ~ 46297952 (-)
G1298177 NA other downstream 2201977 45956059 ~ 45989263 (-)
si:dkeyp-27e10.3 LOC106576037 other upstream 618598 48822973 ~ 48839311 (-)
G1302602 NA other upstream 1446955 49663951 ~ 49664296 (-)
LOC110490244 LOC106609225 other upstream 2082468 50290050 ~ 50301082 (-)
LOC110490264 LOC106576080 other upstream 2982233 51199223 ~ 51205927 (-)
LOC110490744 LOC106576129 other upstream 3569635 51785488 ~ 51793354 (-)

Expression

G1300886 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G1300886 Expression in each Bioproject

Bar chart with 16 bars.
G1300886 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network