G1300748


Basic Information

Item Value
gene id G1300748
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48219710 ~ 48221403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1484030
CTGACCACGGAGACTGGGGTGAGAGGGTGTTGAAGCGTACTTCATGACCTGTAACCGAAAAACAATGGCCTTTTTGGAAAGCTTGAGgcgcagcagcacactgccctccaaagcctgAAAAAAAATCGGCGGACTTTCCCTTTGCATGCAGCTCTGCATGGAACATCCAGTGTCACatccttggtgacgtgtggggtgacatctgggatgaccacagcaacatcctctggaaagggagaaaagagggacaaaatgtaaacaaatg

Function

NR:

description
uncharacterized protein LOC110490180 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1484030 True 265 lncRNA 0.50 2 48219710 48221403

Neighbor

gene id symbol gene type direction distance location
LOC118938805 NA coding upstream 40566 48175444 ~ 48179144 (+)
slco1d1 LOC106575962 coding upstream 57826 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 73441 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 217825 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 482767 47733519 ~ 47736943 (+)
LOC110490846 LOC106576099 coding downstream 43078 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 79199 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 107394 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 114728 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 138396 48359799 ~ 48360553 (+)
G1300736 NA non-coding upstream 3304 48189999 ~ 48216406 (+)
G1300711 NA non-coding upstream 7291 48181474 ~ 48212419 (+)
G1300695 NA non-coding upstream 109372 48110087 ~ 48110338 (+)
G1300629 NA non-coding upstream 222622 47996712 ~ 47997088 (+)
G1300615 NA non-coding upstream 240423 47975647 ~ 47979287 (+)
G1300750 LOC106568775 non-coding downstream 752 48222155 ~ 48229284 (+)
G1300712 NA non-coding downstream 1193 48222596 ~ 48230909 (+)
G1300752 NA non-coding downstream 5733 48227136 ~ 48256446 (+)
G1300754 NA non-coding downstream 8310 48229713 ~ 48241799 (+)
G1300730 NA non-coding downstream 27853 48249256 ~ 48250110 (+)
G1300598 LOC106575986 other upstream 271818 47946368 ~ 47947892 (+)
G1299894 NA other upstream 649047 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1903708 46293582 ~ 46316075 (+)
G1298452 NA other upstream 1959273 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3567631 44649701 ~ 44652079 (+)
G1301200 NA other downstream 363304 48584707 ~ 48585263 (+)
G1301458 NA other downstream 708643 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1173820 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1177055 49398275 ~ 49410313 (+)

Expression


Co-expression Network