G1300712


Basic Information

Item Value
gene id G1300712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48222596 ~ 48230909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1483971
ATAATGCTCCTTACTGCTCTTTCCACAATGCTGTGGACCTTAGGGtcgctgaaatcaacaaaaaggaGAAGACAAAGCTAAACGATGCGCAATGTGCTCACAGAGAACACTGTCTTAGTCTGTTTCTGCATAGTTacagatgtgtagataaatggatcaagtcatatgcagggcagtacatggaactcacatgtcagctggcgaggtggAGTGCAAggagcggcggagcttgcagaCAGCCTCGTGCTCTATGTCtatcatttttaggcaagtgttgACTTCCCAGGTCTGCCGTAGGAAACAGGAAGTCCGATTAGTGAAATTTCACAACATATCTATTCTGCTGTACTAACTAGTTGTTGAAATACTAGTAAAGAGCTCACTGACTTGTAATATGTGTCTAACTCTCATTGtcttaccagccgagcgaggtcattcccctcctccagggtttccttccacacccttcaaataaaacacagagcaattcaactttcctggcttccgatttttctgttgtttattttacccacaCCTCTTGGAgtgctgctggtggcagggaatggcAGTGAAGGTGAGTGATGACGTGGTACTCACCTCTCCCTAAGGGATTTTTTGCCCTGAGACACCAGCCAGCCGCTCATGTGCTCCGTGGTGACATGGTGTGGCACCTggccttgactctggagcagcagatagtggaccatgagcttcttctgcaagatgaggtaaggtgtgagacAGTGCCACGAAATACCATATCATGTGCATTCTGAAGGGCCTCTCACAACATTTCACAACTGTTCATGCATCACAATTTGCAAGTGTTATTAAGAACTCTTATGACCATCTTCTCTAAACTGTCTTGAAATACAACTCTCTTTCTGTTGTTTATGTTTTTTGGGAtgaatcttacctgtttattgtaatatgtttcctcccagcaggcctgcagagtctgGAAATAAAGGCTGCTTCTGCAGAATTGCTTTGAAGAGAATGACaataatgatgctttgttatgcacattGTGCACAGGtatttacagtatgctaaaatgAATATCTCCAaagattacctttgtgggaccataagtgaactccggaatgcaccaaaccctatccatggtaAAATGGGGTAGAAACGCAGCGCTATAGATATACGAGATGCTGTAGAGATAACAGGGATAAGTTAAAGTCGCGAATTATCAATTACTGTGGAGTCGTtcaatatgctgcacttagaattgagTTATTGGCCATGTTTGGCAcgaaatagaatgtttacattctattgctatggagaaatggaatgtgtagaacctTTATAAATGGgtatgcttctatgtctttatgTCGTGAAGATTAAGCTCTTTATTTAgtcataatgtgtatata

Function

NR:

description
PREDICTED: uncharacterized protein LOC106568775

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1483971 True 1397 lncRNA 0.43 2 48222596 48230909

Neighbor

gene id symbol gene type direction distance location
LOC118938805 NA coding upstream 43452 48175444 ~ 48179144 (+)
slco1d1 LOC106575962 coding upstream 60712 48147072 ~ 48161884 (+)
LOC110490734 LOC106576001 coding upstream 76327 48118774 ~ 48146269 (+)
LOC110490177 NA coding upstream 220711 47999128 ~ 48001885 (+)
alg10 LOC106575988 coding upstream 485653 47733519 ~ 47736943 (+)
LOC110490846 LOC106576099 coding downstream 33572 48264481 ~ 48267175 (+)
pyroxd1 pyroxd1 coding downstream 69693 48300602 ~ 48308741 (+)
LOC110490186 LOC106576018 coding downstream 97888 48328797 ~ 48332219 (+)
LOC110490188 LOC106566434 coding downstream 105222 48336131 ~ 48337866 (+)
kiss2 kiss2 coding downstream 128890 48359799 ~ 48360553 (+)
G1300748 NA non-coding upstream 1193 48219710 ~ 48221403 (+)
G1300734 NA non-coding upstream 1789 48190476 ~ 48220807 (+)
G1300736 NA non-coding upstream 6190 48189999 ~ 48216406 (+)
G1300711 NA non-coding upstream 10177 48181474 ~ 48212419 (+)
G1300695 NA non-coding upstream 112258 48110087 ~ 48110338 (+)
G1300730 NA non-coding downstream 18347 48249256 ~ 48250110 (+)
G1300923 NA non-coding downstream 39037 48269946 ~ 48270171 (+)
G1300931 NA non-coding downstream 42285 48273194 ~ 48273489 (+)
G1300957 LOC106566433 non-coding downstream 113910 48344819 ~ 48349516 (+)
G1300967 NA non-coding downstream 129806 48360715 ~ 48360941 (+)
G1300598 LOC106575986 other upstream 274704 47946368 ~ 47947892 (+)
G1299894 NA other upstream 651933 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 1906594 46293582 ~ 46316075 (+)
G1298452 NA other upstream 1962159 46254339 ~ 46260437 (+)
G1296185 NA other upstream 3570517 44649701 ~ 44652079 (+)
G1301200 NA other downstream 353798 48584707 ~ 48585263 (+)
G1301458 NA other downstream 699137 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1164314 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1167549 49398275 ~ 49410313 (+)

Expression


Co-expression Network