G1300953 (ldhb)


Basic Information

Item Value
gene id G1300953
gene name ldhb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48362737 ~ 48367701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1484288
AAGGTTCAAATATTTATTAATTGGTTGTTGTTGTCATTCATTACACAATCAACATGGGTGTTACAGTAAGTCTAAATAAAGTAGGCCGTTTCGATTGATTCCACCTCTGCCCTATCTCCCTCTGACATTGATTGCcagaaagaaagactgaacatCTCTCCTCACACAATAACCAACACCACTGCTCCCCTCAGGAGGACTGAGTTACAGGGTCTGTGTTTCTGCGCTCACTACAGGAAGTGAACAGAACAGTGCTTCAAGACAGTGCAAACGGAGGATAAAGCCAACATTTTTTTTTGATCGTAGTACAATAGCTTCAACACATGAATCCAATGAGGGTGCACACAGTCATACTGGTTCACACAGTACCTAGCATGGAAACACAGCAACCTAATCCTACaaaaggaaaggggggggggggggggtgaaaggaaGAGTATACCAGTAGATTAAGATGAAAGGGAGATGGATCCAGTAGATCGGAGGACGGTTGGAACTAGGTCTGTGTTTGACTGCATCGGGAACGGAAAAGGGAGGGTAGATGTGTGTGTCTAGATGTCCTTGAGGTCCTTCTGGATGCCCCAGAGTGTGTCTGCGCTTTTCTTCAGCTGTCCCACCTCAGCGTCGGTCAGGGTCATATTGATCACGCTGCCCACTCCGTTGCTGTTCAGCACACATGGCAGGGACAGGAACACCTCCTCGCCAATACCATACATGTCTTGACCATGGTGGAGACAGGGTGGATCCTGCTCATGTTCTTGATGATGCTCTCAGTGAGATCAGCCACACTCAGGCCGATGGCCCAGTTAGTGTACCCCTTCAGCTTAATCACCTCGTAGGCACGTCGACCACTGCCTTGTGGGTGGCCTTCCAGTCCTCCTTGTCTCCGTCAAGGCCAAACTCTGGGTTCAGCTTCTGCAAGTTGACTCCAGCCACATTGACACCACTCCACACAGGGACTAGCACACACAGGGAGCAAATCAGATATTTACTCATTCATTTAAACAGATATATTAGAATTTCCTATTTAAAACAAGCAGACTCAACTCATTCATAACACATTCTTTCTGACAGAGACAATTGGATGTGCAGAGTGATGTAAAAAGCCATGCCAAAACAAGTACTTTCGTGGGATTCATTTAAAGCCTTTAAATCTGCCAACAGCCTTGTGGCTTACTAGATGTGACAAGACATTCACACACGCGAGCTCAGATTCCCACTGAAGTACACACGCCACTGACGTCAACACTATCCCCATCATCCCCACCACTGGTATCGCCGTGTTCTCCCAGCACCCATCCGTTGAAACTGGAGGCATGGATGCCCAGGCGCTCAGCCATCAGGAAACGGAAGCGGGCGGAGTCCAGGTTGGTGCCGCTGCCGATGACACGGTGTTTGGGCAATCCGCTCAACTTCCACGTCACATAGGTCAGCACGTCCACTAGGGGGTAGGGAAAAATAGGGTCACACGCACACTTATCCTTGACAATGTTAATGAATGATTGCCCATCCCTGTCACCGAATTTGTTGTCACAGTGACCACCCTATCTTGTAATGTGGAGTGGTGTGATACTGTAGTAGTTGATAAGGGTGGAATGTTGGGACAACACAATCTAGGGGAGAATGAGACAATTTTGTGTGtccaagatttttttttaaatgtctgtgTGTACcggattgtttgtgtgtgtaccgggttgtttgtgtgtgtacctggttgtttgtgtgtatacctggttgtttgtgtgtgtgtgtgtgtgtgtgtacctgggttGGACACCACAATAAGGGTGCAGTTGGGGGAGTGTTTGACAATCTGTGGGATGATGTGTTTAAAGATGTTGACGTTCCTCTGGACCAGGTTgagcctgctctctccctcctgctgACGCACGCCAGCGGACACAACCACGATGCGGGAGTTAGCCGTTACGGCATAATCTTGTCAGCGACTATCTTAGACGTCTTTAGGAAGAGGCTCCCGTGCTGCAGGTCCATCATCTCTCCCTTCAGCTTATCCTCCATCACGTCAACCAGAGCCAGCTCATCAGCCAAGTCCTGAGGAGGACGCTGACGGCACAGGCCATACCCACCATGCCCACCCCCACCACGGTCACCTTGTTCCTGGGGGGCTCCGCGGGGCCGCTGGCCACGGGGGTGAGCAACTTCTGCATCACAGACGACATGATTCACAacgctggagggagggagatagagttTAACCTTCAGTCTAGTTAAGGTTTGTCTACTGAGGGGTAAAagaagaaaacaaatcaaatgaaaACCAAGATGAGAGTGTGTGAAATTTGGGTGAGAGGTCATCATGCCTTTGCGAAAAGCAATCTAATTGACATTCACCATTGAGCGCGCTCTTTAGTTCAGGcataggcttaatctgtgtctggaaaTCCAGCCCAAGGAATCTATTTCTTAAGCCAATCAAacactactgtatttaatttatttacgCACTCAAGACAGAGTCAAAACCAATATCCTAGTaactgcccccccccaaaaaaagggtCTGACAGTCACCCTAATCCTCCCTCCTACCCCATCTTTAGGCCCCCCGAGCCTAAATTCAATCCACAAAACGCACTGCCCCCTCCATTTGCtgaggcgcgcacacacacataaacttgAGCGATAAGTGACGTCAGTGGGAGAGTTGCGCTGTTCGCAAATATCCCAAGCTAGTCCATGTTACTATGGCTGAGTCCAGAGGCAGGACAGTCAGAAAGCTCAAGCAATGGTGTTCTTACAATTTCACCTGAATAGAAGTTCAGCTAACGACACCTGTTCTACTACAGTTTTACATGACAATGTGACTAGTGGGCCTAACATAGCCACATAATGAGCAGCATGACCCAGATTTGTGCATGTTATTGCAATTCTTAAATATGAAAACAGTGCACCCTCTGATGTGTTAATATTTTAATCTTATGACAACGaaggatacagtgccttcagaaagtattcagaccccttgactttttccacaatttgttacgttatacagactctcagaccatgagaaacaagagtctctggtctgatgaaaccaagatttaattatttggactgaatgccaattgtcacgtctggaagatacctggcaccatccctacggtgaagcatggtggtggcagcacagagcgagagagagagagatccttcatgaaaacctgctcaggacctcagactggggtgaaggttcagcttccaacaggacaacaaccctaagcacacagccaagacaacgcaggcgtggcttcgggacaagtctcagaatgtccttgagtggcccagccagagcccggacttgaacccgatcgaacctgaaaatagctgtcagcaatgctccccatccaacctgagagctggagagaagaatgggagaaactctccaaatacaggtgagacaagcttgtagcgtaatacTAAGAAGGCTGCTAAGAAttgctgccaaaaggtgcttcaacaaagtactgagtgaagggtctgaatacttatgtaaaatgtgatttcagttttttttacttTTATAAATTAGCCAAAAATTTGAATTACTCAAGAATCTAAAacggattccatatgtgttatttcatagttgtgatgtcttcactattattctacaatgtagaaaatagtccaatgaaaaaccctggaatgaataggtgtccaaacctttgactggtactgtatatgtatgggTGATTCCTCACAACAAGAACACCATGACTTTCACTCCATTTTATCAATAAAGGGTCCTTTGGAGGAAAGCTTGTTCACATATGACATGTGTCTCTTAAGGCATAATTGAGAAATATTGAATTGTAGTTGCAATGTGACATTGACCTTAC

Function

symbol description
ldhb Enables L-lactate dehydrogenase activity and identical protein binding activity. Predicted to be involved in carbohydrate metabolic process and carboxylic acid metabolic process. Located in cytosol; membrane raft; and mitochondrial inner membrane.

NR:

description
PREDICTED: L-lactate dehydrogenase B chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1484288 True 3866 lncRNA 0.46 5 48362737 48367701

Neighbor

gene id symbol gene type direction distance location
kiss2 kiss2 coding upstream 2184 48359799 ~ 48360553 (+)
LOC110490188 LOC106566434 coding upstream 24871 48336131 ~ 48337866 (+)
LOC110490186 LOC106576018 coding upstream 30518 48328797 ~ 48332219 (+)
pyroxd1 pyroxd1 coding upstream 53996 48300602 ~ 48308741 (+)
LOC110490846 LOC106576099 coding upstream 95562 48264481 ~ 48267175 (+)
LOC110490738 LOC106576023 coding downstream 66057 48433758 ~ 48441874 (+)
LOC110490194 calu coding downstream 102320 48470021 ~ 48479877 (+)
LOC110490196 tnpo3 coding downstream 124874 48492575 ~ 48509832 (+)
lamtor4 LOC106576032 coding downstream 382449 48750150 ~ 48752766 (+)
LOC110490204 LOC106576029 coding downstream 389504 48757205 ~ 48767893 (+)
G1300967 NA non-coding upstream 1796 48360715 ~ 48360941 (+)
G1300957 LOC106566433 non-coding upstream 13221 48344819 ~ 48349516 (+)
G1300931 NA non-coding upstream 89248 48273194 ~ 48273489 (+)
G1300923 NA non-coding upstream 92566 48269946 ~ 48270171 (+)
G1300730 NA non-coding upstream 112627 48249256 ~ 48250110 (+)
G1300972 NA non-coding downstream 10858 48378559 ~ 48378910 (+)
G1300973 NA non-coding downstream 11820 48379521 ~ 48379762 (+)
G1300979 NA non-coding downstream 14655 48382356 ~ 48382602 (+)
G1300981 NA non-coding downstream 16051 48383752 ~ 48384048 (+)
G1300983 NA non-coding downstream 17595 48385296 ~ 48385580 (+)
G1300598 LOC106575986 other upstream 414845 47946368 ~ 47947892 (+)
G1299894 NA other upstream 792074 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2046735 46293582 ~ 46316075 (+)
G1298452 NA other upstream 2102300 46254339 ~ 46260437 (+)
G1301200 NA other downstream 217006 48584707 ~ 48585263 (+)
G1301458 NA other downstream 562345 48930046 ~ 48930588 (+)
G1301706 NA other downstream 1027522 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 1030757 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1810573 50178274 ~ 50178565 (+)

Expression


Co-expression Network