G1301178


Basic Information

Item Value
gene id G1301178
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48537840 ~ 48538177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1484532
ttgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagttgacggtcaatcaccctcggtctggggctccatacaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgacctgaagagagctgggaccacagtctcatagaaaaccattagtaacacactacgctgtcatggattaaaatcctgcagcgcacgcaaggtccccctgctcaatcCAGCTCAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1484532 True 338 lncRNA 0.51 1 48537840 48538177

Neighbor

gene id symbol gene type direction distance location
LOC110490196 tnpo3 coding upstream 28008 48492575 ~ 48509832 (+)
LOC110490194 calu coding upstream 57963 48470021 ~ 48479877 (+)
LOC110490738 LOC106576023 coding upstream 95966 48433758 ~ 48441874 (+)
kiss2 kiss2 coding upstream 177287 48359799 ~ 48360553 (+)
LOC110490188 LOC106566434 coding upstream 199974 48336131 ~ 48337866 (+)
lamtor4 LOC106576032 coding downstream 211973 48750150 ~ 48752766 (+)
LOC110490204 LOC106576029 coding downstream 219028 48757205 ~ 48767893 (+)
LOC110490205 LOC106576033 coding downstream 237279 48775456 ~ 48783034 (+)
LOC110490215 LOC106576040 coding downstream 314402 48852579 ~ 48859532 (+)
LOC110490216 LOC106609152 coding downstream 416893 48955070 ~ 48957811 (+)
G1301173 NA non-coding upstream 7047 48530555 ~ 48530793 (+)
G1301169 NA non-coding upstream 10717 48526878 ~ 48527123 (+)
G1301167 NA non-coding upstream 13623 48524004 ~ 48524217 (+)
G1301164 NA non-coding upstream 16276 48521343 ~ 48521564 (+)
G1301162 NA non-coding upstream 18216 48519355 ~ 48519624 (+)
G1301182 NA non-coding downstream 3558 48541735 ~ 48542001 (+)
G1301256 NA non-coding downstream 56270 48594447 ~ 48594697 (+)
G1301272 NA non-coding downstream 64474 48602651 ~ 48603258 (+)
G1301291 NA non-coding downstream 69968 48608145 ~ 48608345 (+)
G1301313 NA non-coding downstream 101676 48639853 ~ 48646791 (+)
G1300598 LOC106575986 other upstream 589948 47946368 ~ 47947892 (+)
G1299894 NA other upstream 967177 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2221838 46293582 ~ 46316075 (+)
G1298452 NA other upstream 2277403 46254339 ~ 46260437 (+)
G1301200 NA other downstream 46530 48584707 ~ 48585263 (+)
G1301458 NA other downstream 391869 48930046 ~ 48930588 (+)
G1301706 NA other downstream 857046 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 860281 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1640097 50178274 ~ 50178565 (+)

Expression


Co-expression Network