G1301272


Basic Information

Item Value
gene id G1301272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48602651 ~ 48603258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1484632
atgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagaaaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccatagccccccgacacataaactactgcagcataaata
>TU1484633
atgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagaaaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccatagccccccgacacataaactactgcagcataaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1484632 False 356 lncRNA 0.48 2 48602651 48603258
TU1484633 True 356 lncRNA 0.48 2 48602651 48603258

Neighbor

gene id symbol gene type direction distance location
LOC110490196 tnpo3 coding upstream 92819 48492575 ~ 48509832 (+)
LOC110490194 calu coding upstream 122774 48470021 ~ 48479877 (+)
LOC110490738 LOC106576023 coding upstream 160777 48433758 ~ 48441874 (+)
kiss2 kiss2 coding upstream 242098 48359799 ~ 48360553 (+)
LOC110490188 LOC106566434 coding upstream 264785 48336131 ~ 48337866 (+)
lamtor4 LOC106576032 coding downstream 146892 48750150 ~ 48752766 (+)
LOC110490204 LOC106576029 coding downstream 153947 48757205 ~ 48767893 (+)
LOC110490205 LOC106576033 coding downstream 172198 48775456 ~ 48783034 (+)
LOC110490215 LOC106576040 coding downstream 249321 48852579 ~ 48859532 (+)
LOC110490216 LOC106609152 coding downstream 351812 48955070 ~ 48957811 (+)
G1301256 NA non-coding upstream 7954 48594447 ~ 48594697 (+)
G1301182 NA non-coding upstream 60650 48541735 ~ 48542001 (+)
G1301178 NA non-coding upstream 64474 48537840 ~ 48538177 (+)
G1301173 NA non-coding upstream 71858 48530555 ~ 48530793 (+)
G1301169 NA non-coding upstream 75528 48526878 ~ 48527123 (+)
G1301291 NA non-coding downstream 4887 48608145 ~ 48608345 (+)
G1301313 NA non-coding downstream 36595 48639853 ~ 48646791 (+)
G1301329 NA non-coding downstream 60061 48663319 ~ 48663572 (+)
G1301355 NA non-coding downstream 103464 48706722 ~ 48707056 (+)
G1301357 NA non-coding downstream 104939 48708197 ~ 48708475 (+)
G1301200 NA other upstream 17388 48584707 ~ 48585263 (+)
G1300598 LOC106575986 other upstream 654759 47946368 ~ 47947892 (+)
G1299894 NA other upstream 1031988 47569830 ~ 47570663 (+)
brd1a LOC106575995 other upstream 2286649 46293582 ~ 46316075 (+)
G1301458 NA other downstream 326788 48930046 ~ 48930588 (+)
G1301706 NA other downstream 791965 49395223 ~ 49396921 (+)
LOC110490228 NA other downstream 795200 49398275 ~ 49410313 (+)
G1303015 NA other downstream 1575016 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 1698187 50301445 ~ 50302351 (+)

Expression


Co-expression Network