XLOC_031988



Basic Information


Item Value
gene id XLOC_031988
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20406465 ~ 20410219 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00064615
GAATTCTgactgcatataaaaacaatcaaacccatcgcaatttgttggttgagagacgaggcgactttgcagagcatttctgtgcgattcctgagatttctgaagctgttggaggatttctgagagaaaaagacttattttaaagagcacaatttctctaatcatctttttttcgtaatttttctgattatttttttaaatacaattttgttgctgttttttcattccttcttcttcttcttcttcttctccttcttcttcttctttactttgttttacatttattttcatatttgtctgtttttgtctgttttattgcaggttggaggagattgtccatgtcccacatgggtgaagaaagaggagAAGATACACGGGACGGCACCACTGAGCTTCCTGGTTTTTTTGGCTCCTGTGCCTTCACATTTGGCTgattctgcatccacagaccagaggaacagcaagaggaaaaggcaGAGCAGCAACCAGCAAACACTGTCCACCTCGTCCAGCAGACcagccaaacgctctcgcagagacttgtaccagaagggcccgttgctgggacgaggtggattcggctctgtgtttgctgggatgcgcaggtctgatggactgccagtggccatcaagtaTGTGTCAAAGGACCGGACCCCTGAGCGactgaaagttgatggtcagggtcggctgccgctggaggtggcattgatgacccgtgtcacgtcagctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgctacatcctgatcctggagcgaccggatccttgccaagatctctagagcttctgtgaggagaacggctgtctggatgagcgtctggccaagaaagtgctggtgcagctgattgcggccctaaaacactgcgagagccgcggcgtcctgcaccgggacgtcaaaccagaaaacctgctgatctccacagagtcccaggacatcaagctgctggacttcggctgtggagatctgctgaagcgatcggcctacaaatactttgcaggcactcctgcatacgctcctcctgagtggtttcgtagacatcgctaccatgcgactccagccacagtctggtcagtaggagtgacgctctacaacatcctgtgtgaccgtttcccattcagaggcgcacagagggtcacgtccagaagcagactgaccttccctaggagcttgtcaacagagtgccgtcagctgattcgctggtgtctcagtgcagcaccgGCTGATCGACCCAGTTTAGCTGACattgagagccatccctg

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00064615 True 1307 lncRNA 0.50 7 20406465 20410219

Neighbor


gene id symbol gene type direction distance location
XLOC_031987 BX927341.3 coding upstream 73021 20333347 ~ 20333444 (+)
XLOC_031986 BX537296.4 coding upstream 231484 20174884 ~ 20174981 (+)
XLOC_031985 BX537296.1 coding upstream 273836 20132532 ~ 20132629 (+)
XLOC_031984 pik3r5 coding upstream 426504 19933763 ~ 19979961 (+)
XLOC_031983 stx8 coding upstream 603885 19689464 ~ 19802580 (+)
XLOC_031989 slc19a1 coding downstream 236936 20647155 ~ 20670145 (+)
XLOC_031990 igfbp5a coding downstream 500332 20910551 ~ 20918694 (+)
XLOC_031991 stk11ip coding downstream 544181 20954400 ~ 20999623 (+)
XLOC_031992 cx44.2 coding downstream 591045 21001264 ~ 21028431 (+)
XLOC_031993 si:dkey-91f15.1 coding downstream 643329 21053548 ~ 21066911 (+)
XLOC_031981 CR925723.2 non-coding upstream 1356485 19046987 ~ 19049980 (+)
XLOC_031979 NA non-coding upstream 1525801 18879457 ~ 18880664 (+)
XLOC_031998 NA non-coding downstream 1115363 21525582 ~ 21529277 (+)
XLOC_032000 NA non-coding downstream 1273769 21683988 ~ 21696868 (+)
XLOC_032002 BX005430.1 non-coding downstream 1414181 21824400 ~ 21824516 (+)
XLOC_032003 NA non-coding downstream 1450431 21860650 ~ 21862708 (+)
XLOC_032004 NA non-coding downstream 1532179 21942398 ~ 21942993 (+)

Expression



Co-expression Network