Gene
RNA
| Item | Value |
|---|---|
| gene id | G1301706 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 49395223 ~ 49396921 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1485115 | False | 636 | TUCP | 0.56 | 1 | 49395223 | 49395858 |
| TU1485110 | False | 496 | lncRNA | 0.38 | 1 | 49396426 | 49396921 |
| TU1485113 | False | 462 | lncRNA | 0.38 | 1 | 49396426 | 49396887 |
| TU1485114 | True | 345 | lncRNA | 0.37 | 1 | 49396577 | 49396921 |
49,394,400
49,394,800
49,395,200
49,395,600
49,396,000
49,396,400
49,396,800
49,397,200
49,397,600
49,398,000
49,398,400
49,398,800
49,399,200
49,399,600
49,400,000
49,400,400
49,400,800
49,401,200
49,401,600
NC_048579.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490226 | ifrd1 | coding | upstream | 2102 | 49383233 ~ 49394324 (+) |
| LOC110490220 | LOC106576044 | coding | upstream | 155376 | 49110297 ~ 49241050 (+) |
| LOC110490219 | LOC100286412 | coding | upstream | 289744 | 49065642 ~ 49106682 (+) |
| LOC110490217 | LOC106576042 | coding | upstream | 337660 | 49051915 ~ 49058766 (+) |
| LOC118938893 | NA | coding | upstream | 359640 | 49035992 ~ 49036786 (+) |
| LOC110490228 | NA | coding | downstream | 1354 | 49398275 ~ 49410313 (+) |
| foxp2 | LOC106609245 | coding | downstream | 283610 | 49680531 ~ 49794962 (+) |
| LOC110490234 | LOC106576051 | coding | downstream | 441602 | 49838523 ~ 49863700 (+) |
| LOC118938923 | NA | coding | downstream | 622696 | 50019617 ~ 50023828 (+) |
| LOC110490236 | LOC106609240 | coding | downstream | 765023 | 50161944 ~ 50170265 (+) |
| G1301684 | NA | non-coding | upstream | 50117 | 49346093 ~ 49346309 (+) |
| G1301480 | NA | non-coding | upstream | 350331 | 48958882 ~ 49046095 (+) |
| G1301490 | NA | non-coding | upstream | 409378 | 48982949 ~ 48987048 (+) |
| G1301489 | NA | non-coding | upstream | 415078 | 48975623 ~ 48981348 (+) |
| G1301708 | NA | non-coding | downstream | 837 | 49397758 ~ 49398022 (+) |
| G1301727 | NA | non-coding | downstream | 33885 | 49430806 ~ 49431122 (+) |
| G1301728 | NA | non-coding | downstream | 35928 | 49432849 ~ 49433060 (+) |
| G1302201 | NA | non-coding | downstream | 49224 | 49446145 ~ 49488630 (+) |
| G1302242 | NA | non-coding | downstream | 112609 | 49509530 ~ 49510799 (+) |
| G1301706 | NA | other | upstream | 568 | 49395223 ~ 49396921 (+) |
| G1301458 | NA | other | upstream | 465838 | 48930046 ~ 48930588 (+) |
| G1301200 | NA | other | upstream | 811163 | 48584707 ~ 48585263 (+) |
| kiss2 | kiss2 | other | upstream | 1035987 | 48359799 ~ 48360553 (+) |
| G1300598 | LOC106575986 | other | upstream | 1448534 | 47946368 ~ 47947892 (+) |
| G1303015 | NA | other | downstream | 781353 | 50178274 ~ 50178565 (+) |
| G1303095 | LOC106609233 | other | downstream | 904524 | 50301445 ~ 50302351 (+) |
| LOC110490250 | LOC106609227 | other | downstream | 962289 | 50358439 ~ 50372219 (+) |
| G1303641 | NA | other | downstream | 1350441 | 50747362 ~ 50747715 (+) |
| G1299894 | NA | other | upstream | 1824560 | 47569830 ~ 47570663 (+) |
