G1301706


Basic Information

Item Value
gene id G1301706
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 49395223 ~ 49396921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1485115
agggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcattggtgaatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctctggcaggaactgctgacactccagccacatgaggtctaccATTGTCGtgtattaggaggaacccagggccaaccacaccagtatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctacctttggtgagcacatggagggctgtgcggccccccaaagaaatgccaccccacaccatgactgacccaccgccaaactggtcatgctggaggatgttgcaggcagtagAATGttttctccacggcgtctccagattctgtcacgtctgtcacgtcctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaaccgccacctgtggacgtcgggccctcataccaccctcatggagtctgtttctgaccg
>TU1485110
tatttttttgagcagtgtatataaaaaaatatatatttctagaGACCTTAAGCGATGTGCTCACCTGCCTGTTTTGGTACAAAGCTGGGGGATGGAGAAATGGGCCACGCTTTATTTGGATAGCCCATCGTTAGTGTTAGTAGGTAGTTGAACTGTTACTGATTGTCTGTAGAGCATCAAGAGACAAGACTATCCAAATGAATTGTTACcgggaaatgtaaccactctcaaattcagaCAGCGGTGTGGATGCAGTGACTGACCATCAATGATAGTAAAagtattgttttaaccatgttttgaggctatacagtgttttacattgtttacaaatggaggaaaacaagcttatattttgggttctgatgcaGTATGACATTTGAACTAAGCTCAGGTGTTTTATTTTTCAAGAAGCAGTGGGTATAAACTGGATGTAGCAACGAAGGAGTCTAGCTTTAAGGGACAGTTCAACCAAATTGCAAAATGACATATTGCA
>TU1485113
tatttttttgagcagtgtatataaaaaaatatatatttctagaGACCTTAAGCGATGTGCTCACCTGCCTGTTTTGGTACAAAGCTGGGGGATGGAGAAATGGGCCACGCTTTATTTGGATAGCCCATCGTTAGTGTTAGTAGGTAGTTGAACTGTTACTGATTGTCTGTAGAGCATCAAGAGACAAGACTATCCAAATGAATTGTTACcgggaaatgtaaccactctcaaattcagaCAGCGGTGTGGATGCAGTGACTGACCATCAATGATAGTAAAagtattgttttaaccatgttttgaggctatacagtgttttacattgtttacaaatggaggaaaacaagcttatattttgggttctgatgcaGTATGACATTTGAACTAAGCTCAGGTGTTTTATTTTTCAAGAAGCAGTGGGTATAAACTGGATGTAGCAACGAAGGAGTCTAGCTTTAAGGG
>TU1485114
ACTGTTACTGATTGTCTGTAGAGCATCAAGAGACAAGACTATCCAAATGAATTGTTACcgggaaatgtaaccactctcaaattcagaCAGCGGTGTGGATGCAGTGACTGACCATCAATGATAGTAAAagtattgttttaaccatgttttgaggctatacagtgttttacattgtttacaaatggaggaaaacaagcttatattttgggttctgatgcaGTATGACATTTGAACTAAGCTCAGGTGTTTTATTTTTCAAGAAGCAGTGGGTATAAACTGGATGTAGCAACGAAGGAGTCTAGCTTTAAGGGACAGTTCAACCAAATTGCAAAATGACATATTGCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1485115 False 636 TUCP 0.56 1 49395223 49395858
TU1485110 False 496 lncRNA 0.38 1 49396426 49396921
TU1485113 False 462 lncRNA 0.38 1 49396426 49396887
TU1485114 True 345 lncRNA 0.37 1 49396577 49396921

Neighbor

gene id symbol gene type direction distance location
LOC110490226 ifrd1 coding upstream 2102 49383233 ~ 49394324 (+)
LOC110490220 LOC106576044 coding upstream 155376 49110297 ~ 49241050 (+)
LOC110490219 LOC100286412 coding upstream 289744 49065642 ~ 49106682 (+)
LOC110490217 LOC106576042 coding upstream 337660 49051915 ~ 49058766 (+)
LOC118938893 NA coding upstream 359640 49035992 ~ 49036786 (+)
LOC110490228 NA coding downstream 1354 49398275 ~ 49410313 (+)
foxp2 LOC106609245 coding downstream 283610 49680531 ~ 49794962 (+)
LOC110490234 LOC106576051 coding downstream 441602 49838523 ~ 49863700 (+)
LOC118938923 NA coding downstream 622696 50019617 ~ 50023828 (+)
LOC110490236 LOC106609240 coding downstream 765023 50161944 ~ 50170265 (+)
G1301684 NA non-coding upstream 50117 49346093 ~ 49346309 (+)
G1301480 NA non-coding upstream 350331 48958882 ~ 49046095 (+)
G1301490 NA non-coding upstream 409378 48982949 ~ 48987048 (+)
G1301489 NA non-coding upstream 415078 48975623 ~ 48981348 (+)
G1301708 NA non-coding downstream 837 49397758 ~ 49398022 (+)
G1301727 NA non-coding downstream 33885 49430806 ~ 49431122 (+)
G1301728 NA non-coding downstream 35928 49432849 ~ 49433060 (+)
G1302201 NA non-coding downstream 49224 49446145 ~ 49488630 (+)
G1302242 NA non-coding downstream 112609 49509530 ~ 49510799 (+)
G1301706 NA other upstream 568 49395223 ~ 49396921 (+)
G1301458 NA other upstream 465838 48930046 ~ 48930588 (+)
G1301200 NA other upstream 811163 48584707 ~ 48585263 (+)
kiss2 kiss2 other upstream 1035987 48359799 ~ 48360553 (+)
G1300598 LOC106575986 other upstream 1448534 47946368 ~ 47947892 (+)
G1303015 NA other downstream 781353 50178274 ~ 50178565 (+)
G1303095 LOC106609233 other downstream 904524 50301445 ~ 50302351 (+)
LOC110490250 LOC106609227 other downstream 962289 50358439 ~ 50372219 (+)
G1303641 NA other downstream 1350441 50747362 ~ 50747715 (+)
G1299894 NA other upstream 1824560 47569830 ~ 47570663 (+)

Expression


Co-expression Network