XLOC_000032


Basic Information

Item Value
gene id XLOC_000032
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1571847 ~ 1578251 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002806
TACAAAATAACACACGATTAATGCACTGGAGCTTAAAACACATGTGGAACTCACCAGGATGAAAAAGGGTGCAAGTTTAAGTGTTAATGGTTAACACGGGCTGGTCCGATCGCTGGGTTTCTTGGCCTGTATTAACAGCTGTAAAGATAAGCAGTGTTCAGAGTTTGGAGTCCAGAGGCTGCCACAGAAGAGAAGGATGAAACCAGCAGGTGCTCAGTTACTTCAGCCGGAGCCCGAAAGAAGAGCAGAAGCTAAGAAAGATACCTGCTGAGCATATGAGGCGAACAGAGAAGCTGAAAGGAGAAAGGTCTGACCTCTTGCTCTCAGTAACAAGGATTCATCCTGTTGTGGTACTCAAATCCAACAGGGAATCTCTGTTACTGGGGTTAAGGTTCAGAAATTCGCTTTGCGGGGGGCTGAAGATGCCGGAGACACCTTGAAATCAAGGCTAATGACATAGAAAAATGCTGAATAAACATTGTTAACATGCATTGACTTCCTATTAATCGACCTGTCCATTGAGAGTCCAAAGCTCAAATTGGCTTTCGCATATAATTAGCAGTAATCTATTTGTTTTTAAGACAATGTGCAAAGCTTCTGTCTATATAGTAAGACATGCACAACAATATCAAAgacaaaacagttttttaatatttcatccAATGCTTGGAAATGTTGAGATTCTCATAAAAACAAAACCCAAATGACACACatttaagttatattattatgatatatatatatatatatatatatatatatatatatatttgcatctACAGATTAGTATTTAGATTTATATAtcaaaaaacataaaacttttacattataacattttaaatatagatcAAGTAAACAATACATGTGTGTAAAAGCCATAGgacaaagtcaaagtcagctttattgtcaattcagccacatgcaCAGGACACAGAGAATCAAAATTGTGTTACTCTCAGAGCCTAGGTACataacaaataatattataaatacaattacacatataatctaaaaaatataagtaaaaataaaaattcattaatttttcatttattcattcatttattttcttgtcggattagtccctttattaatccagggtcgccacagcggaatgaaccgccaactcatccagcaagtttttacgcagcggatgcccttccagccgcaacccatttctgggaaacatccacacacacattcacacacacacacacacac
>TCONS_00002807
TACAAAATAACACACGATTAATGCACTGGAGCTTAAAACACATGTGGAACTCACCAGGATGAAAAAGGGTGCAAGTTTAAGTGTTAATGGTTAACACGGGCTGGTCCGATCGCTGGGTTTCTTGGCCTGTATTAACAGCTGTAAAGATAAGCAGTGTTCAGAGTTTGGAGTCCAGAGGCTGCCACAGAAGAGAAGGATGAAACCAGCAGGTGCTCAGTTACTTCAGCCGGAGCCCGAAAGAAGAGCAGAAGCTAAGAAAGATACCTGCTGAGCATATGAGGTTTCACCCCGCTAAATACTGGACAGGATCGGCCCAGGAGAGGCTGAGAGATGGGGACCCGTGTTGTTTACCTGTCATGGCTGCTCGGCCTCTGCTCTTCATCATTTCTCCCTGGGGTCTTCCCATCTCCCCCGCTGGTCCCGTTCCACTTGCTACTTCTCAAACTAGCAAGGGGTCTCCAGAGGCTCTCAATTAACTAGCTAGTCAGCACACTAGATGCCAGAGCAGTGCTGCGGAAAGCAACAGAAGTAGGATATTAAACAGACTGCAAACATTGAACACTTCTCTCCCTCAAGGGTGATGGTAGTGGGAAATAATTATTCACAGTTCAGCTCCGTAAAGCATATGTAAATATGTTGGTGCTGTGAAACTATAGGGgcatgcttgattctgattggctgatgaatgttctaaacattattaaatgcaga
>TCONS_00000061
CCTCTTGCTCTCAGTAACAAGGATTCATCCTGTTGTGGTACTCAAATCCAACAGGGAATCTCTGTTACTGGGGTTAAGGTT

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0042738 exogenous drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0042493 response to drug biological_process
GO:0017144 drug metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0008395 steroid hydroxylase activity molecular_function
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080051

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002806 False 1221 lncRNA 0.36 2 1571847 1576390
TCONS_00002807 False 711 lncRNA 0.47 2 1571847 1578251
TCONS_00000061 True 81 miRNA 0.44 1 1575483 1575563

Neighbor

gene id symbol gene type direction distance location
XLOC_000031 NA coding upstream 211016 1358731 ~ 1360831 (+)
XLOC_000030 NA coding upstream 229610 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 coding upstream 353042 1218691 ~ 1218805 (+)
XLOC_000028 NA coding upstream 538209 1015812 ~ 1033638 (+)
XLOC_000027 n6amt1 coding upstream 600896 961607 ~ 970951 (+)
XLOC_000033 urp2 coding downstream 21728 1599979 ~ 1614500 (+)
XLOC_000034 NA coding downstream 38952 1617203 ~ 1619314 (+)
XLOC_000035 atp1a1a.4 coding downstream 111524 1689775 ~ 1706159 (+)
XLOC_000036 atp1a1a.1 coding downstream 133889 1712140 ~ 1796832 (+)
XLOC_000037 atp1a1a.3 coding downstream 227043 1805294 ~ 1815660 (+)
XLOC_000026 NA non-coding upstream 660296 794976 ~ 911551 (+)
XLOC_000043 NA non-coding downstream 423465 2001716 ~ 2005632 (+)
XLOC_000044 NA non-coding downstream 445158 2023409 ~ 2023645 (+)
XLOC_000049 CR352215.1 non-coding downstream 697354 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 824852 2403103 ~ 2403224 (+)

Expression


Co-expression Network