G1304413


Basic Information

Item Value
gene id G1304413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 51273438 ~ 51274430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1488077
CTTGATTCTTGCTGTATTCCAAATGGACACCTACCCCTTAGGCACTTAAAAGGAAAACTACactcaaaaacaatattttggtgTTTGTtacattagtccactgttgataccaAAATGTTTGCATGTCAGCGGTTTTCAAGATGctggactttcaagaagcaaagtgtcacttgCCACATCATAGTTTTTGAGTGGATGTTTCCTTTAAAGTAGATCTTATCTAGTCGTCTCATATCGACACTAGTGTCCAGTGGGTATGGGTTGGTTTGGACCTGGGCATATCTTACCCAGGTCAAGTGCACTGGGTGTGTGAGAAACGACTTGGCCATATGTTATATTATAATGATGTTAACATACCTATGGGACGGACATGCATACTCTCACTGCAATTATGCATTATATACACTGCATCGTCTGTACGGCGGACATGTGTTGTGTACATCAATATGTAACGAATAATTCAAGTACAACTATGCGCAAGTGTAATTTCGGACTCAATCTCAGTTCTAACTACCAAGATTGTGAAATTGATTTGATTAAGTTTATTTATTTGTCTTCACCAATAATGTACAGGTCCTTCTGAAACTTGTACCCACAACGCTCTTGTATTATAGTATGAATAAAAG
>TU1488078
caactgtatatataatatactaaCTGTGCTTGAACATAAGATATCTTTTTTATGTCCGACTTGCCTTAATCTTCCAAAGCAAGAATGTATtcttttttaaatcatttttgaTTCATTTCAGGTCATTTCATACCTTATAGCTTGAAAACATGAGCCCCTGTGGTGCTGTAGAGTAGGGAAAGGGGAGGTGAAAACAACATGTCTATTTTTCAACCAGAGATGAGTCTAGGGAATTTAAAAATGCTTCCGATTAGGCCTATATTTGTATAACTTTATATGTTAttgctattttattttattattactattttcaCTTTGTACATGCAGAGgggaagggatggaggggtgggtgggaTATGTGCTTAACCTTGATTCTTGCTGTATTCCAAATGGACACCTACCCCTTAGGCACTTAAAAGGAAAACTACactcaaaaacaatattttggtgTTTGTtacattagtccactgttgataccaAAATGTTTGCATGTCAGCGGTTTTCAAGATGctggactttcaagaagcaaagtgtcacttgCCACATCATAGTTTTTGAGTGGATGTTTCCTTTAAAGTAGATCTTATCTAGTCGTCTCATATCGACACTAGTGTCCAGTGGGTATGGGTTGGTTTGGACCTGGGCATATCTTACCCAGGTCAAGTGCACTGGGTGTGTGAGAAACGACTTGGCCATATGTTATATTATAATGATGTTAACATACCTATGGGACGGACATGCATACTCTCACTGCAATTATGCATTATATACACTGCATCGTCTGTACGGCGGACATGTGTTGTGTACATCAATATGTAACGAATAATTCAAGTACAACTATGCGCAAGTGTAATTTCGGACTCAATCTCAGTTCTAACTACCAAGATTGTGAAATTGATTTGATTAAGTTTATTTATTTGTCTTCACCAATAATGTACAGGTCCTTCTGAAACTTGTACCC
>TU1488079
CTTGATTCTTGCTGTATTCCAAATGGACACCTACCCCTTAGGCACTTAAAAGGAAAACTACactcaaaaacaatattttggtgTTTGTtacattagtccactgttgataccaAAATGTTTGCATGTCAGCGGTTTTCAAGATGctggactttcaagaagcaaagtgtcacttgCCACATCATAGTTTTTGAGTGGATGTTTCCTTTAAAGTAGATCTTATCTAGTCGTCTCATATCGACACTAGTGTCCAGTGGGTATGGGTTGGTTTGGACCTGGGCATATCTTACCCAGGTCAAGTGCACTGGGTGTGTGAGAAACGACTTGGCCATATGTTATATTATAATGATGTTAACATACCTATGGGACGGACATGCATACTCTCACTGCAATTATGCATTATATACACTGCATCGTCTGTACGGCGGACATGTGTTGTGTACATCAATATGTAACGAATAATTCAAGTACAACTATGCGCAAGTGTAATTTCGGACTCAATCTCAGTTCTAACTACCAAGATTGTGAAATTGATTTGATTAAGTTTATTTATTTGTCTTCACCAATAATGTACAGGTCCTTCTGAAACTTGTACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1488077 False 626 lncRNA 0.38 1 51273438 51274063
TU1488078 False 961 lncRNA 0.37 1 51273470 51274430
TU1488079 True 594 lncRNA 0.39 1 51273470 51274063

Neighbor

gene id symbol gene type direction distance location
LOC110490264 LOC106576080 coding downstream 67511 51199223 ~ 51205927 (-)
LOC110490262 LOC106576078 coding downstream 108242 51152066 ~ 51165196 (-)
c15h12orf56 cssa17h12orf56 coding downstream 124195 51126735 ~ 51149243 (-)
LOC110490261 LOC106609216 coding downstream 146803 51124030 ~ 51126635 (-)
LOC110490260 LOC106576076 coding downstream 149733 51095835 ~ 51123705 (-)
LOC110490265 LOC106576097 coding upstream 401 51274831 ~ 51280180 (-)
LOC110490268 LOC106576083 coding upstream 6048 51280478 ~ 51287146 (-)
LOC110490266 LOC106609208 coding upstream 15181 51289611 ~ 51301497 (-)
LOC110490744 LOC106576129 coding upstream 511058 51785488 ~ 51793354 (-)
LOC118936382 NA coding upstream 542678 51817108 ~ 51819851 (-)
G1304355 NA non-coding downstream 98427 51174772 ~ 51175011 (-)
G1304352 NA non-coding downstream 103516 51169334 ~ 51169922 (-)
G1304342 NA non-coding downstream 121722 51151516 ~ 51151716 (-)
G1304302 NA non-coding downstream 216980 51051493 ~ 51056458 (-)
G1304291 NA non-coding downstream 263037 51008866 ~ 51010401 (-)
G1304426 LOC100380855 non-coding upstream 29565 51303995 ~ 51315870 (-)
G1304430 NA non-coding upstream 37581 51312011 ~ 51312442 (-)
G1304464 NA non-coding upstream 105030 51379460 ~ 51382461 (-)
G1304539 NA non-coding upstream 243827 51518257 ~ 51519053 (-)
G1304570 NA non-coding upstream 296947 51571377 ~ 51572035 (-)
LOC110490244 LOC106609225 other downstream 972431 50290050 ~ 50301082 (-)
G1302602 NA other downstream 1609142 49663951 ~ 49664296 (-)
si:dkeyp-27e10.3 LOC106576037 other downstream 2434287 48822973 ~ 48839311 (-)
celsr1a LOC106576003 other downstream 3569400 47584674 ~ 47707520 (-)
G1304896 LOC107662719 other upstream 647065 51921495 ~ 51922528 (-)
G1304988 NA other upstream 715281 51989711 ~ 51990173 (-)
LOC110490288 LOC106609184 other upstream 1532553 52630838 ~ 52809711 (-)
G1306232 LOC106576137 other upstream 1780419 53054849 ~ 53062280 (-)

Expression


Co-expression Network